Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02660 ATGGACAACGAGATCGATGTTCCTTCATTCTTTGTCTGCCCCATTTCCTTAGAAATCATGAAGGATCCAGTGACGGTTTCCACGGGCATCACCTACGACCGTGAAAGCATCGAAACCTGGTTGTTCTCTAAGAGAAACACCACATGCCCCGTCACCAAACAACCCTTGTTAGATTACACCGAACTCACCCCTAACCACACCCTTCGGAGACTCATCCAAGCGTGGTGTACCATGAACGCTTCTTACGGCATCGAAAGGATCCCAACTCCAAAACCTCCTGTTAACAAGACTCAGATTTCGAAGCTTCTTAAAGACGCTCCTCACTCCCCTCTAATTTGCCTCCGAAGACTCAAATCCATCGCTTCGGGAAGCGAGACAAATAAGCGATGCATGGAAGCTGCAGGTGCTGTTGAGTTCCTAGCATCGATTGTGATGAACAACAATAGCAAAAACGATTCTTCAATTGGAACTGATCCCAATGATGGATCTGGATTCGAGTTGAAAACAAATCCAAGCGATGAAGCTTTGAGTTTGCTTCACAATCTTCATTTATCTGAACAAGGGTTGAAGACTCTTCTAAGCTTCAGAAACGGAGAGTTTATCGAGTCTTTGACAAGAGTCATGCAGAAGGGGTTCTTTGAATCACGTGCTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTCGCTGATCCAGTGCAATTGTTGCATCTAAGTCAGGAACTTTTCGTGGAATTAGTGCAAGTATTGAAGGATCAGATTTCAACAATGACATCAAAAGCGATCCTTCAAACCTTAATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAAGGCAGTGGAAGCAGGAACCGTTCCTGTTCTTATAGAGCTTCTTCTGGATTGCAATGATAGAAAGCCTTGTGAGATGATGCTGGTGCTGTTGGAGATACTGTGCCAGTGTGCTGAGGGAAGAGCAGAACTATTGAGTCATGGAGCAGGTCTTGCCATTGTTTCAAAGAAGATTCTAAGAGTTTCGACATTGGCGAATGATAGGGCTGTTAGGATTCTTCTGTGTATTTCCAAGTTTTCTGCGACTCCACATGTTGTTCAAGAAATGCTGAAACTTGGTGTGGCGGCGAAACTGTGCTTGGTGCTTCAGGTGGATAGTGGAAACAAGGCCAAGGAAAAGGCAAGAGAGATACTCAAATTGCATGGTCGGGCGTGGAAGAATTCTCCATGCATACCGAACAAATTGCTTTCTTCACACCCTTATGCGTGA 1260 0.4476 MDNEIDVPSFFVCPISLEIMKDPVTVSTGITYDRESIETWLFSKRNTTCPVTKQPLLDYTELTPNHTLRRLIQAWCTMNASYGIERIPTPKPPVNKTQISKLLKDAPHSPLICLRRLKSIASGSETNKRCMEAAGAVEFLASIVMNNNSKNDSSIGTDPNDGSGFELKTNPSDEALSLLHNLHLSEQGLKTLLSFRNGEFIESLTRVMQKGFFESRAYAVFLLKSMSEVADPVQLLHLSQELFVELVQVLKDQISTMTSKAILQTLIQFSPWGRNRIKAVEAGTVPVLIELLLDCNDRKPCEMMLVLLEILCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLCISKFSATPHVVQEMLKLGVAAKLCLVLQVDSGNKAKEKAREILKLHGRAWKNSPCIPNKLLSSHPYA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02660 419 PANTHER WDSAM1 PROTEIN 4 409 IPR045185 GO:0061630
Spst1g02660 419 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Spst1g02660 419 CDD RING-Ubox_PUB 8 58 IPR045210 -
Spst1g02660 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Spst1g02660 419 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Spst1g02660 419 SUPERFAMILY ARM repeat 113 385 IPR016024 -
Spst1g02660 419 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Spst1g02660 419 Gene3D - 101 402 IPR011989 -
Spst1g02660 419 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Spst1g02660 419 SUPERFAMILY RING/U-box 4 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02660 Spst-Chr1 34993156 34994415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02660 1 417 U-box Gene Family AT3G52450 56.782 9.99e-171 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02660 - - gmx:100811258 738.799