Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02655 ATGCACGACTTGTTCTCCACCACTTCCTCCTGCCGAAGCCACCGGTTTCCTCCGTCTCCAGACCACAGCATCATCGAAATGGCCGCCGCCGCCGCCGGCGATCACGATGGAGCAGCAAGCCTTGCGACGTACTTCGGCAACGTGGAAGAGATAACGGAAAAGCTGAACGAGGTGGAGCGGTTGAAGCTCAGTCTGAAGAGATCTCACGAACAAGGCAAGACGCTTCACAATGGCAAAGCCGTGAAGGACCTTCGCTTAGCCATGGAAGCTGACGTGGCACTCGCTCTCGGGACCACGAAGCTCATCAGGTTCCAGTTAGAGGCGCTCGAAAGCGCCAATGCCGATCACCGGAAACTCCCCGGCCGTGGACCGGGTTCGTCCTCCGACCGGTCCCGAACCTCTGCGGTGATCGCTCTGAGGAAGAAGCTGAAGATCTCCTTGGACGGCTTCAATGAACTGCGTGAACAGATAAACGGGGAACACCGTGAGACCGTTCAACGCCAATATTTCACCGTCACCGGCAAGAATCCCGACGATAAAACCCTCGACCTCTTGATCTCTTCCGGTGAGAGTGAGAATTTACTACAGAAAGCCATTGAAGAGCAGGGTAAGGGAAGTATTGAGGAGACTATTAACGAAATAGAAGAGAGGCATGATGGGATTAAAGAGTTGGAGAACAACCTGAAAGAGTTGCATCAGGTGTTCCTTGACATGACAGCGCTGATTCAATCTCAAGGTGAGCAATTGGATGATATAGAGAACCACATGGCGAGAGCAAACTCCTTCATCAGGAACGGGACTCAGAATCTGGAAACTGCAAGGAAGGGGCAGAAAAACTACCGGAAATGGGGCTATTGTGCTATTATCCTGCTTATAGTGATTGTCTTGTTTGTAGTGCTCTTTTTTGGTGCCCAAAGTTTAGATGATATAATTCTACATCTGCTGCAATCTGGGACACCAAAAGTTGTTTCTTCTGTAGGTAGATTTTGGAATTTCCTTTTACCAGTCATAATCTTTTGCTTTTAG 1026 0.499 MHDLFSTTSSCRSHRFPPSPDHSIIEMAAAAAGDHDGAASLATYFGNVEEITEKLNEVERLKLSLKRSHEQGKTLHNGKAVKDLRLAMEADVALALGTTKLIRFQLEALESANADHRKLPGRGPGSSSDRSRTSAVIALRKKLKISLDGFNELREQINGEHRETVQRQYFTVTGKNPDDKTLDLLISSGESENLLQKAIEEQGKGSIEETINEIEERHDGIKELENNLKELHQVFLDMTALIQSQGEQLDDIENHMARANSFIRNGTQNLETARKGQKNYRKWGYCAIILLIVIVLFVVLFFGAQSLDDIILHLLQSGTPKVVSSVGRFWNFLLPVIIFCF 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02655 341 Pfam SNARE domain 247 299 IPR000727 -
Spst1g02655 341 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst1g02655 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Spst1g02655 341 SMART tSNARE_6 206 273 IPR000727 -
Spst1g02655 341 Coils Coil 48 68 - -
Spst1g02655 341 Pfam Syntaxin 44 246 IPR006011 GO:0016020
Spst1g02655 341 CDD SynN 41 198 IPR006011 GO:0016020
Spst1g02655 341 Coils Coil 207 241 - -
Spst1g02655 341 Gene3D - 202 304 - -
Spst1g02655 341 Gene3D - 41 168 - -
Spst1g02655 341 PANTHER SYNTAXIN 50 294 IPR045242 -
Spst1g02655 341 FunFam Syntaxin 132 204 303 - -
Spst1g02655 341 CDD SNARE_syntaxin1-like 217 272 - -
Spst1g02655 341 SMART SynN_4 36 162 IPR006011 GO:0016020
Spst1g02655 341 SUPERFAMILY t-snare proteins 43 266 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02655 Spst-Chr1 34962052 34963765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02655 37 283 SNARE and Associated Proteins AT3G11820 61.943 1.72e-107 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02655 K08486 - csav:115699700 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02655 1 34962052 34963765 Spst7g00167 7 1288161 1290311 PCT