Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02654 ATGAACGACTTGTTATCGAGTTTGTTCTCAAAGGGAAAACAGCAGCAACAACAAGAGCAGCACGTGATCGAAATAACACAAGGTGGCATGGACTTGGACAAGTTCTTCCTAGAAGTGGAATCGGTGAAGGAAGAACTGAAGGAAATAGAGCGTCTCCACCTAAGTCTCCGTGCCTCAAATCAAAATGGAAAAGCGCTTCACAGCCCGAAGGGCGTTAGGGAGCTTCGGTCTCGCATGGACCTGGACGTGGCTCTTGCTCTCACCAAAGCCAAGCTAGTGAAGACTCACTTGGAGGCTCTCCACCGCGCCAACCAAGCCACCCTCTCCTTGCCCGATTGCGGACCCGGTTCGTACTCCGACCGGACCCGAACCGCATTGGTCGGAGCCTTGTTCAAGAACCTGAAACAGTCCATGGAGAGTTTCAATAAGCTGAGAGAGCAGATATCGTACGAGTACAGAGACACCTTGCAACGTAGATACTACGCTGTCACCGGAGAGAACCCTGATCAAGAAACCATTGACCTCCTCATCTCTACGGGTGAGAGTGAAACTTTCTTACAGAAAGCCATCAAAGAGCAAGGGAGAGCCACCATCATGGACACTATCCAAGAGATTCAGGAGAGGCACGGTACGGTAAAAGAGATAGAGAGAAGTCTACACGAGCTGCATCAAGTGTTCTTGGACATGGCAGTGTTGATCCAACACCAGGGTGAACACTTGGATGACATAGAGAGCCACGTGGCGCTTGCAAATTCCACCGTGAGCAAAGGGGTGCGTCATTTGCAGGTTGTGAAGAATCATCAGAAGAACACCCGTAACTTGACCTGTTTTGCCATACTCCTCTTCATTATCGTGTTGGTCATAGTTCTCCCTATTATTTTCAGAAACTGA 891 0.4938 MNDLLSSLFSKGKQQQQQEQHVIEITQGGMDLDKFFLEVESVKEELKEIERLHLSLRASNQNGKALHSPKGVRELRSRMDLDVALALTKAKLVKTHLEALHRANQATLSLPDCGPGSYSDRTRTALVGALFKNLKQSMESFNKLREQISYEYRDTLQRRYYAVTGENPDQETIDLLISTGESETFLQKAIKEQGRATIMDTIQEIQERHGTVKEIERSLHELHQVFLDMAVLIQHQGEHLDDIESHVALANSTVSKGVRHLQVVKNHQKNTRNLTCFAILLFIIVLVIVLPIIFRN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02654 296 Coils Coil 32 59 - -
Spst1g02654 296 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Spst1g02654 296 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Spst1g02654 296 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst1g02654 296 SUPERFAMILY t-snare proteins 29 257 IPR010989 GO:0016020|GO:0016192
Spst1g02654 296 CDD SynN 32 189 IPR006011 GO:0016020
Spst1g02654 296 SMART SynN_4 27 153 IPR006011 GO:0016020
Spst1g02654 296 Gene3D - 32 159 - -
Spst1g02654 296 PANTHER SYNTAXIN 24 285 IPR045242 -
Spst1g02654 296 Pfam SNARE domain 240 290 IPR000727 -
Spst1g02654 296 CDD SNARE_syntaxin1-like 201 262 - -
Spst1g02654 296 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 29 159 - -
Spst1g02654 296 Gene3D - 192 295 - -
Spst1g02654 296 SMART tSNARE_6 197 264 IPR000727 -
Spst1g02654 296 FunFam Syntaxin 132 195 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02654 Spst-Chr1 34947396 34949166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02654 26 276 SNARE and Associated Proteins AT3G11820 62.550 1.51e-113 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02654 K08486 - gmx:100810727 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02654 1 34947396 34949166 Spst7g00169 7 1292605 1293809 PCT