Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02652 ATGGCTGCTACAGCTTCTGTTTCCTCTTCTATCTACAACAGAACATACAACCTTTTCCTCACCCACTCTTCCATTTCACTCACCACCAACTTCCCTCAAAGACCCATATCCCAAAAACAACTCAATCTCAACCTCAAGTCCCAAAGTTTCAGTCTTTCGTTTCTCCCACTTCACCGTCTGCCTCCACCTTCCGCCGCCCTTGATGGGTTGGAAGTGGGTCAAGACAGCTCTGAGTCACCAGAACCAGAAACAGAAACTGAAACCTCTGAAAAGACAGAACAAGAGAAAGACCAAAAGGTTTCAGACTCGAACGATAACGATACTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATTACTAATTCCCAATTGACAGATCTCTTTGGAGAAGCTGGCACCGTGGCCTCTGCTGAGATTGTGTATGATCGTGTCACGAGTAGAAGCAGGGGATTTGCATTTGTTACAATGGGAAGTGTAGAGAATGCTAAAGAGGCAATTCGAATGTTTGATAGCTCTCAAGTTGGTGGTAGGACTGTTAAGGTAAACTTCCCAGAGGTACCCAAAGGAGGGGAAAGGTTGGTAATGGGGGCAAAAATAAGGAACAACAACAAAGGCTTTGTAGACAGTCCTCACAAGATCTATTGTGGAAACCTTGGCTGGGGAGTCACCTCACAGAGTCTTAGAGAGGCTTTCGCTGAGCAGCCAGGCGTATTGGGTGCCAAGGTCGTCTATGAGAGGGACAGTGGAAGATCTCGAGGTTTCGGGTTTGTTTCCTTTACAACTGCCGAGTCTGCAGAAGCTGCCTTGGACTTTATGAATGGTGTGGAGGTACAAGGTCGCCCATTGCGGTTGAATATGGCCGAAGCGAGGACACCATCATCTCCTCCAGTAATTGAGGAAAATGCAGGAAGCAATGTTGAAAGATCGGAATTGGTCTCTAGTGCCAGAACATAA 957 0.4671 MAATASVSSSIYNRTYNLFLTHSSISLTTNFPQRPISQKQLNLNLKSQSFSLSFLPLHRLPPPSAALDGLEVGQDSSESPEPETETETSEKTEQEKDQKVSDSNDNDTGRLYVGNLPYSITNSQLTDLFGEAGTVASAEIVYDRVTSRSRGFAFVTMGSVENAKEAIRMFDSSQVGGRTVKVNFPEVPKGGERLVMGAKIRNNNKGFVDSPHKIYCGNLGWGVTSQSLREAFAEQPGVLGAKVVYERDSGRSRGFGFVSFTTAESAEAALDFMNGVEVQGRPLRLNMAEARTPSSPPVIEENAGSNVERSELVSSART 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02652 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Spst1g02652 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Spst1g02652 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 284 IPR000504 GO:0003723
Spst1g02652 318 CDD RRM1_PSRP2_like 110 189 - -
Spst1g02652 318 Gene3D - 67 193 IPR012677 -
Spst1g02652 318 Gene3D - 197 296 IPR012677 -
Spst1g02652 318 CDD RRM2_NsCP33_like 213 288 - -
Spst1g02652 318 MobiDBLite consensus disorder prediction 288 318 - -
Spst1g02652 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Spst1g02652 318 SUPERFAMILY RNA-binding domain, RBD 208 294 IPR035979 GO:0003676
Spst1g02652 318 MobiDBLite consensus disorder prediction 65 110 - -
Spst1g02652 318 MobiDBLite consensus disorder prediction 84 104 - -
Spst1g02652 318 FunFam 33 kDa ribonucleoprotein, chloroplastic 194 298 - -
Spst1g02652 318 PANTHER OS02G0815200 PROTEIN 44 293 - -
Spst1g02652 318 SMART rrm1_1 110 183 IPR000504 GO:0003723
Spst1g02652 318 SMART rrm1_1 213 286 IPR000504 GO:0003723
Spst1g02652 318 SUPERFAMILY RNA-binding domain, RBD 100 185 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02652 Spst-Chr1 34926990 34931196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02652 96 291 Eukaryotic Initiation Factors Gene Family AT3G16380 32.500 2.17e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02652 - - gmx:100814852 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02652 1 34926990 34931196 Spst7g00594 7 5477310 5479647 PCT