Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02651 ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACACAATTTTGTAGGGGCCTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGTTTTTGGATCTCAACCTGTTCATGGGGGAGAGTCTTGTGGCCAAATGAAACCCTTTTCTTTGGAGCTTCCTAACTGCATAGGCCAACTTGCTGCCAGTAAGACTGCGACAAGAGGAGCTGAACAAGTGTTAGGCAAAGGACATAAAACTCAGTTTACCATCTTTCCAGATGATTGTAAATTGTCAGATGATGCACAGACGCTTCAGACAACCATATCACTGCAGCCATCACTTGCTGACTCTCAGTCACGTTTTGAGATAGGATTTAGCCAGCCCATGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATATACGTCAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGCCAATCCCGCGCCAAAGCTGTACTTGATCACAAACTGACTAAACGTCGCAAGCCTTATATGCACGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGAGGTCGCTTCTTGAACACGAGGAAATCTGCTAATGGAAATGGCAAAACTGGAAATCAAGTGCATGAAACTATTGGTGAACAATTTCATTCCAGTGGCTCTCAGAGTTCTGAATTCCTTCAGTCTGAGGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTGTGGTTCAGAGGTGACTAGCATGTATTCGCGGGGAGGTCTCGACAGATTTTCCCTTAATCATTTTGGATCTGCTGTCAACACTCTGGCAGACATGATAGATGGTGGGCGTGGTATGATGATACCCCCCAAATGGGTTGCAGCAGCAGGTAGCTGCTGCAACCTTAAAGTTTGA 993 0.4491 MAMQTVYLKEHEGNAHNFVGALSSAASAPWWSVFGSQPVHGGESCGQMKPFSLELPNCIGQLAASKTATRGAEQVLGKGHKTQFTIFPDDCKLSDDAQTLQTTISLQPSLADSQSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSANGNGKTGNQVHETIGEQFHSSGSQSSEFLQSEAGTLNSSKETNGSSPNICGSEVTSMYSRGGLDRFSLNHFGSAVNTLADMIDGGRGMMIPPKWVAAAGSCCNLKV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02651 330 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Spst1g02651 330 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Spst1g02651 330 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Spst1g02651 330 MobiDBLite consensus disorder prediction 241 272 - -
Spst1g02651 330 Gene3D - 161 221 - -
Spst1g02651 330 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Spst1g02651 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Spst1g02651 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 71 281 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02651 Spst-Chr1 34922553 34925539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02651 1 330 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.045 3.02e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Spst1g02651 CBFB_NFYA 9.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02651 K08064 - gmx:100527677 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02651 1 34922553 34925539 Spst7g00173 7 1310852 1313793 PCT