Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02649 ATGCCTAGGAGAAAGAAAATGACACTGCAACTGATTGAGAATTTTGTGACAAGAAAAACTCGTTACAGAAAAAATCGGGAAATTTTATTGAAGAAGGTGGAAGATCTTGCCACCCTTTGTGATTTGAATGCATGTGTAATCATCTATGGCCCAGGGGATAACGAGCCAACTGTGTGGCCATCTCGTGAGATTGCTAAAGAGATGCTCGACAAGTTTGAGAATGCTCCATTGTCGGACCGGGTAAGAAAAAATGTTACCCCACAACTTTATATTCAGCAAATGAATAAAAAGATTGAAAATCATATTGTGAAACTCAAGAAGAAGAACGATGAGAAAGACGTGTCAAATTTCATGCATAAAATACATGATGGTAAATCTTTATCTGATTTTGATGCTAGTGATATATCTCGTTTGCTTTGTTATGTGGAGGGGAAATTGAAGTTTATTGGAGTAAAAAAATTTGATCTTTCTGAGCAACTATTGTCTACTGAACCTCCAACACCACCAGTTTCTTTTTCTCTACAGAATGATATTGATTCTTGTGCTGACACAGATGAACAAGTTTTCCAACAACAATCATCCATAGATTCACCGAAAGAAACTGGTCAAATGAATAGTGATTCTGATAATAATATAGCCAGCAACACAGGACTGTCACCAATATTACAACCAGATGTTAGTGATGTTGATACTGTGTTGCCTCAAGTTAATTTTGAATGTTTGGATTTGGATGATATTGATATGGTGTTACCTTCAGGAAATTTGGATGGTCTGATTGATGATAATGACTTAGGGTTTGGGATGTTGCCTGAAGATAATTTTGAAGATCTTTGTGATAGTAGTGATTTAAGGCTTTTATACCAGAGATCTTCTGGTGAAAGTAGAGACAGTGACATGTGGTCATCTTATGAAAGTTTTGGAGACCTGTTTAGTGAGAGTGATATGATGTTGCCCTTCAAGCATAATGTTCAAGACAACATTAATGAAACTTTCATAGCAACAAATGTTGAAAATCAGGATGAATCCATTAACAATATTGAAGAGGGTCATCAGCACACCTTTGGAGCCAACAATGGTGGACCTATCTTGAGGAAATCCAATACAAATTTTGTTAGCACTACCAATGAAGGAAACTTGAACTCTTGA 1146 0.363 MPRRKKMTLQLIENFVTRKTRYRKNREILLKKVEDLATLCDLNACVIIYGPGDNEPTVWPSREIAKEMLDKFENAPLSDRVRKNVTPQLYIQQMNKKIENHIVKLKKKNDEKDVSNFMHKIHDGKSLSDFDASDISRLLCYVEGKLKFIGVKKFDLSEQLLSTEPPTPPVSFSLQNDIDSCADTDEQVFQQQSSIDSPKETGQMNSDSDNNIASNTGLSPILQPDVSDVDTVLPQVNFECLDLDDIDMVLPSGNLDGLIDDNDLGFGMLPEDNFEDLCDSSDLRLLYQRSSGESRDSDMWSSYESFGDLFSESDMMLPFKHNVQDNINETFIATNVENQDESINNIEEGHQHTFGANNGGPILRKSNTNFVSTTNEGNLNS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02649 381 Coils Coil 91 111 - -
Spst1g02649 381 CDD MADS_SRF_like 4 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Spst1g02649 381 ProSiteProfiles MADS-box domain profile. 2 50 IPR002100 GO:0003677|GO:0046983
Spst1g02649 381 MobiDBLite consensus disorder prediction 186 218 - -
Spst1g02649 381 SUPERFAMILY SRF-like 4 93 IPR036879 GO:0003677|GO:0046983
Spst1g02649 381 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Spst1g02649 381 Gene3D - 16 101 IPR036879 GO:0003677|GO:0046983
Spst1g02649 381 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02649 Spst-Chr1 34878473 34879618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02649 4 146 Type I MADS-box Gene Family AT1G65300 32.639 8.87e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst1g02649 SRF-TF 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02649 - - var:108328520 462.996