Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02648 ATGAGCAGCAACACTGCAGTTGATTCCCCTGGATTCCTTGGCTCAACCAACATCAGTGGCTATAGTTATGGCATAGGAATCTCCATTGGAATTCTCTTGCTCATCATGGCCATTACTCTAACTTCCTACTTCTGCACCAGAACAAATGTCTCATTTGCTCCAGCAACTAGGAGCAGGAGACTCGCCCCAAATGTTCTTCAACCACAGCACTCTATAGTTGATGGAAGCTTAGATGAAGCCACGATTCGGAGTTATCCAACCCTGCTGTACTCTGAAGCCAAGGTCCAGAAGTCTGATTCCACTGCAACATGTTGCTCCATTTGTCTGACAGATTACAAGTGTACTGATATGCTTCGCGTGCTACCAGATTGTGGGCACCAATTCCACCTCAAGTGCATAGATCCATGGTTGAGATTGCATCCCACTTGTCCAGTTTGTAGAACATCTCCAATTCCAACGCCACTCTCAACTCCTCTGGCTGAAGTGGTTCCATTGGCTATCAGACAGGATTCATAG 516 0.4651 MSSNTAVDSPGFLGSTNISGYSYGIGISIGILLLIMAITLTSYFCTRTNVSFAPATRSRRLAPNVLQPQHSIVDGSLDEATIRSYPTLLYSEAKVQKSDSTATCCSICLTDYKCTDMLRVLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLAIRQDS 171
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02648 171 CDD RING-H2_EL5-like 104 147 - -
Spst1g02648 171 SUPERFAMILY RING/U-box 81 153 - -
Spst1g02648 171 Pfam Ring finger domain 105 147 IPR001841 -
Spst1g02648 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 151 IPR013083 -
Spst1g02648 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 161 IPR045899 -
Spst1g02648 171 FunFam E3 ubiquitin-protein ligase ATL6 66 152 - -
Spst1g02648 171 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Spst1g02648 171 SMART ring_2 105 146 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst1g02648 Spst-Chr1 34864006 34864521 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02648 8 166 C3H Transcription Factor Family AT2G35910 60.494 6.74e-55 171
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02648 - - gmx:100811799 286.574
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02648 1 34864006 34864521 Spst7g00175 7 1325497 1326000 PCT