Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02626 ATGCGGAGCTTCAGGATGAGAAACTTGTTGTCCCGAGTCAAGAGAAGAACAAAGAAAACCATTAGAAACAGAAACATAGCCACAAGAAACTGCATTCCCATAACAAAAGAGTTAACACGCTCAGTGGAACAAGAAGATGAAGAAATTACTGAGGAAGGTTTCAGCATCAAAAGCTCTGCCCCATCACACACTCACGGTGTTCAACCCTTGGGAAATCTCTATCTGAACCCAGGTTCCGTTAACTCCAGAGACACTGGCTTGGGTAATCTTCATACCCTTTCGGATGAGCTTGTTCTTGACATTCTCGGGTTTCTGGAAGCTTCTTCTGTAGGAATTTTGGCCAGTGTCAGCAAGTCTTTCTACGTGTTCACCAACCATGAACCCCTTTGGAGGAATCTCGTGTTGGAGAATCTTCCTGCTGGGTTTCAGTACAAAGGATCCTGGAAATCCACCTATGTTTCTGCTTGTTACCCTTCATTTGATGACTCCGCTATTGCTCTTGGGGGTTTTAAAGTTAGAGACTTTTACTCGGATTATCTTTTCCAGAGTTGGCTATGTGCTAACCTTGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTACGGAAGAGGGGAATTTCGGTTGAGGAATTTGTGTTGAATTTTGAGGAGCCTAATAAGCCGGTGTTATTGGAAGGGTGTATTGATAATTGGGGTGCGTTGGGAAATTGGGATAGGGATTACTTGATAAGGTTGTGTGGCGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAGCTTGGAGATTACTTTGGATACTCGGATCAGGTCAGAGAGGAAAGGCCCTTATATTTGTTTGACCCCAAGTTTGCTGAAAAAGTTCCAAAATTGGGTGATGAATATGAAGTTCCAGTGTACTTTAGGGAAGACTTGTTTAGTGTTTTGGACAATGAGAGGCCAGACTACAGGTGGATTATTATTGGACCTGCAGGGTCTGGATCTTCTTTCCATGTTGATCCGAATTCAACCTCGGCTTGGAATGCAGTGATCAAGGGGTCCAAGAAATGGATTTTGTTTCCTCCTGATGTGATTCCACCTGGTGTTCATCCTAGTCCTGATGGGGCCGAAGTGGCATCTCCTGTTTCGATAATTGAATGGTTCATGAACTTCTATGGAGCAACCAAAAATTGGAAAACGAAACCAATTGAGTGTGTATGTAAAACTGGAGAGGTGATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCCATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGGTAAATGTCTTGGATTTTCTGAAAAGGCCAAATGCAAGCACACTGGTATCTGGAACAAGGGATCGAGTGAATTTGTACGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCCGGAGAAATTGATGATTTGACTCGGAAAGAAGAAGAGAGAAAGATCCAGCAGAGGAAACTCCCCTTTTGGGATTCTGTAACAGATGCTAATGCGGGAGCTTTCAAGTTCTCTTTCTAG 1536 0.4323 MRSFRMRNLLSRVKRRTKKTIRNRNIATRNCIPITKELTRSVEQEDEEITEEGFSIKSSAPSHTHGVQPLGNLYLNPGSVNSRDTGLGNLHTLSDELVLDILGFLEASSVGILASVSKSFYVFTNHEPLWRNLVLENLPAGFQYKGSWKSTYVSACYPSFDDSAIALGGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEEPNKPVLLEGCIDNWGALGNWDRDYLIRLCGDVKFSVGPVEMKLGDYFGYSDQVREERPLYLFDPKFAEKVPKLGDEYEVPVYFREDLFSVLDNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKTKPIECVCKTGEVIFVPSGWWHLVINLEESIAITQNYVSRRNLVNVLDFLKRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDDLTRKEEERKIQQRKLPFWDSVTDANAGAFKFSF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02626 511 ProSiteProfiles JmjC domain profile. 286 446 IPR003347 -
Spst1g02626 511 Gene3D - 82 158 - -
Spst1g02626 511 SMART cupin_9 277 446 IPR003347 -
Spst1g02626 511 FunFam F-box protein At1g78280 181 431 - -
Spst1g02626 511 Pfam Cupin-like domain 211 429 IPR041667 -
Spst1g02626 511 SUPERFAMILY Clavaminate synthase-like 203 444 - -
Spst1g02626 511 SUPERFAMILY F-box domain 84 155 IPR036047 GO:0005515
Spst1g02626 511 SMART fbox_2 93 133 IPR001810 GO:0005515
Spst1g02626 511 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 87 509 - -
Spst1g02626 511 Pfam F-box domain 93 131 IPR001810 GO:0005515
Spst1g02626 511 Gene3D Cupin 182 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02626 Spst-Chr1 34720828 34723267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02626 78 435 Glycosyltransferase AT1G78280 39.510 2.26e-79 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst1g02626 Cupin_8 7.2e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02626 - - gmx:100782241 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02626 1 34720828 34723267 Spst1g02626 1 34720828 34723267 ECH