Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02618 ATGGTTTTAGGTTTTGGTTCTTTTGGATTTGGAGGGATGGAGTCTCAGGTGAAGCACGCTCTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGGGGACAGGTGACCCAGGTTAGAGTTAAGTTTTTGGATGATCAGAACCGTCACATTATGAGGAATGTGAAAGGACCTGTGAGAGAAGGTGACATTCTCACCCTACTCGAATCTGAGAGGGAAGCAAGAAGATTGCGCTAG 234 0.4615 MVLGFGSFGFGGMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02618 77 PANTHER 40S RIBOSOMAL PROTEIN S28 13 77 IPR000289 GO:0003735|GO:0005840|GO:0006412
Spst1g02618 77 Hamap 30S ribosomal protein S28e [rps28e]. 13 77 IPR000289 GO:0003735|GO:0005840|GO:0006412
Spst1g02618 77 FunFam 40S ribosomal protein S28 12 77 - -
Spst1g02618 77 Gene3D - 11 77 IPR012340 -
Spst1g02618 77 Pfam Ribosomal protein S28e 16 76 IPR000289 GO:0003735|GO:0005840|GO:0006412
Spst1g02618 77 SUPERFAMILY Nucleic acid-binding proteins 13 77 IPR012340 -
Spst1g02618 77 CDD S1_S28E 18 77 IPR000289 GO:0003735|GO:0005840|GO:0006412
Spst1g02618 77 ProSitePatterns Ribosomal protein S28e signature. 68 76 IPR028626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02618 Spst-Chr1 34657780 34658125 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02618 13 77 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 2.80e-35 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02618 K02979 - gmx:100788626 103.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02618 1 34657780 34658125 Spst1g02618 1 34657780 34658125 ECH