Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02609 ATGGATATGCCTACCATTGATGTGGACCTTGGGCCTGAGAAGCTTGAAGATGAGAAACAGGGAGGTCCCTTGTTGCATTGTGATCTTTGTGATACAGAAGTAATTCACAAGTTGGCTCAAATGTTCCTGCCAGGTCTAGCCAGTGCTTGTGTTGATAACACATCAGGAGGTCTCTTTAAGACTCCTGGTTCAGTGGCTGTTGATATGAGGAAGGAGATGATAGAGTATCTGACCCAAAGAAGTGAATCGTTTGTTGCTGAGTCTGTTATTTTGGAAGGTGGTCCAGATGGTGAAGTATCAGACCATCCTTATGATATCATTTCCAATTTAGTTGATGACTTTGCAAGTTCAAAGAGAAATTTTTTAAGCCGGGTTTCAGGATGGCTTCTGAGTGAAACAAGGGAAGACAAAATAGATGATTTTGTTCAAGACATGGAAATGAATGGGTTTTGGACACATGAAAGGAGAGAAACAGTTGCAGAAACTCTACTCAAGAATGTTGACTATGAGAACTCATATCACTGCAACATGAGTTTTAATTCTGCAGAAGATCTTGCCAATCATATTGATAGTTGCAACTTTAGATCTATGATATGTGAAAATGAGGGATGCAATTCAAAATTTTGTGCATCTCATTTAGAAAAGCATGATTCAAGTTGTCCTTTCAAGATAATTCCCTGTGAACAAAAGTGTTCTGCTAACATTATGAGACGTGACATGGACAGACATTGCATAACTGTTTGTCCAATGAAGCTTGTAAAATGTCCCTTTTATGCCATTGGTTGTCGTTCCGCCGTTGCACAATGCATGATTGAAATACATCGCTCAGATGATATCAATTCTCACTTGTGGCACTTCCTTAAAGGGATCTACAAAGAAGCATCTGGGGATGATCTTAATCGACGAGTGGAGCAAATTGTACAGGCATCACCAAACAACCGTTTAGCAGGGGCTAGAGATGTTAGATCTTTGAACTATGTTGTCAAGGATATTGAAGCTAAGTTAGGACCTTTCGAAGTGACTATTGTGGAGAAAGATAATGTGGAAAATGATGGCAAGAATGATGAAGGGGAAGGTGGTGAGACTAATATGAACAACAGTGAAAAGAGCACAAATGCTTTAGATATAGTTAATTCATCAGATAAAGTTGAAGTGAGTGAGACAGAGAATACAAGTGCAAATAAAACTGTCGAAAATGAAGATAGTAAACTTGCTGAAAATAAAAATCATGAAGAGAGGACACAAACTTCGAATATGACAGATTTATCAAATGAAGTTGATATTTTGAATGATGAGAACAAAGATGCTGCAACTAGTAAATTACAAATGAAGGCCATTGAAGAGAGCACTCAAGCACACAAGGACAAGTTATCAAATGAAGAAGTTACTGCAAGAAACGAGGATAGTACAAAGAATAACATCGAAGGCAAATACAATGAAGACAATAGGCAAATATCAAATGAAGAGAGTAAATTTGAAGATAAGAACAACGAACAAAGCATACATTATTCAAAAGTGGGAGTCAAAGGTGATGTGGAGAATAATTTTCAGAACAATGATATTGAGATGATAGCTTAA 1578 0.3745 MDMPTIDVDLGPEKLEDEKQGGPLLHCDLCDTEVIHKLAQMFLPGLASACVDNTSGGLFKTPGSVAVDMRKEMIEYLTQRSESFVAESVILEGGPDGEVSDHPYDIISNLVDDFASSKRNFLSRVSGWLLSETREDKIDDFVQDMEMNGFWTHERRETVAETLLKNVDYENSYHCNMSFNSAEDLANHIDSCNFRSMICENEGCNSKFCASHLEKHDSSCPFKIIPCEQKCSANIMRRDMDRHCITVCPMKLVKCPFYAIGCRSAVAQCMIEIHRSDDINSHLWHFLKGIYKEASGDDLNRRVEQIVQASPNNRLAGARDVRSLNYVVKDIEAKLGPFEVTIVEKDNVENDGKNDEGEGGETNMNNSEKSTNALDIVNSSDKVEVSETENTSANKTVENEDSKLAENKNHEERTQTSNMTDLSNEVDILNDENKDAATSKLQMKAIEESTQAHKDKLSNEEVTARNEDSTKNNIEGKYNEDNRQISNEESKFEDKNNEQSIHYSKVGVKGDVENNFQNNDIEMIA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02609 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 281 IPR013083 -
Spst1g02609 525 MobiDBLite consensus disorder prediction 449 506 - -
Spst1g02609 525 MobiDBLite consensus disorder prediction 449 500 - -
Spst1g02609 525 Coils Coil 419 439 - -
Spst1g02609 525 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 24 469 - -
Spst1g02609 525 MobiDBLite consensus disorder prediction 394 415 - -
Spst1g02609 525 MobiDBLite consensus disorder prediction 346 424 - -
Spst1g02609 525 Coils Coil 471 498 - -
Spst1g02609 525 ProSiteProfiles Zinc finger TRAF-type profile. 211 263 IPR001293 GO:0008270
Spst1g02609 525 MobiDBLite consensus disorder prediction 359 393 - -
Spst1g02609 525 Pfam TRAF-type zinc finger 216 271 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02609 Spst-Chr1 34584035 34586529 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g02609 zf-TRAF 8e-11 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02609 - - gmx:100799182 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02609 1 34584035 34586529 Spst1g02609 1 34584035 34586529 ECH
Spst1g02609 1 34584035 34586529 Spst7g00217 7 1567041 1596575 PCT