Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02601 ATGCCGGCTGGTCACGGTTTGAGATCTCGCACTAGAGATTCCTTCTCTCGTCCCTTTAGGAAGAAGGGAACCATCGCCCTCACCACTTACCTCCGAACTTACCGCATCGGCGATTACGTGGACATCAAGGTTAACGGCGCCGTGCATAAGGGGATGCCTCACAAATTCTACCATGGCCGCACTGGTCGCGTCTGGAACGTCACCAAACGCGCCATTGGTGTCGAGGTTAACAAACAGGTGGGAAACAGAATTATTAGAAAGAGGATTCATGTGCGTGTGGAGCACGTGATGCCTTCAAGGTGCACCGAGGAGTTCCGTTTGAGGAAGATCAAGAATGATGAACTCAAGGCGGAAGCTAAGGCGAAGGGTGAAAAAATAAGCACCAAGAGACAACCTGAGGGTCCTAAACCGGGTTTCATGGTGGAAGGAGCTACATTGGAGACTGTAACTCCCATCCCTTACGACGTGGTCAATGACCTTAAAGGGGGATATTAG 495 0.5091 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYRIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDELKAEAKAKGEKISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02601 164 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Spst1g02601 164 MobiDBLite consensus disorder prediction 118 137 - -
Spst1g02601 164 Gene3D - 99 156 - -
Spst1g02601 164 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Spst1g02601 164 FunFam 60S ribosomal protein L21 1 98 - -
Spst1g02601 164 PANTHER 60S RIBOSOMAL PROTEIN L21 1 163 IPR001147 GO:0003735|GO:0005840|GO:0006412
Spst1g02601 164 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Spst1g02601 164 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Spst1g02601 164 FunFam 60S ribosomal protein L21 99 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02601 Spst-Chr1 34465373 34466185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02601 1 164 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 84.756 7.58e-106 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02601 K02889 - gmx:100305629 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02601 1 34465373 34466185 Spst1g02601 1 34465373 34466185 ECH