Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02595 ATGGCGGAAGGGAAGGAAGAGAGTAAATCTAGCGAAGAGAGCGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAACCCGAACTCCTTGCAATGTTCAAGGAGTTTGCGCTCGTCGACGAGGTCAACATAATCAAGGACAAAGCAACTCGTGTTTCCCGAGGGTGTTGCTTCGTAATTTGTCCCTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCACAATAAGAAGACGCTACCCGGGGCATCTAGTCCATTACAAGTAAAGTATGCGGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTCTCTGAAGTTGAAATATCTGCACTTTTCTCTAATTATGGAACTATAAAGGATTTACAGGTTTTAAGGGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACATACCGATTCCCAGCATCCGTCATTGTTTGGAGCCTTGCCTATGAGTTACGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGAGGTTATGGGATCATGCCCTACCGAATGCCACCGATGCAGAGTCAACACGGTTTCCATAATATGATGCCTCACATGAATCAAGCAAATGCATTACGGCCTGATCTTGGCCCTAATATGAACCCCAGAAATTATCATGTGCCTCCTGGAAATTACGTTGGTTCTTACCCTGCTGTAACAGGTTTACAACATCCTATGCCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATACTTCTTCTGGTTCTGTTTCACCTGCTAGTGGAAATAACAACTCTGCTGCATCTTCAGGCGGCAACAAAAATTCCGGGGGTCAAGTTGAAGGACCACCTGGCGCGAACCTATTTATTTATCACATACCTCAAGAGTTTGGAGATCAAGAGCTTGCTAATGCTTTTCAACCTTTTGGTATAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACTGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAGGCTGCTCAATCTGCCATCAATATGATGAATGGATTCCAATTAGGAGGTAAGAAGTTAAAGGTCCAACTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1296 0.4375 MAEGKEESKSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRVSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSNYGTIKDLQVLRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHPSLFGALPMSYVPPYNGYGYQAPGGYGIMPYRMPPMQSQHGFHNMMPHMNQANALRPDLGPNMNPRNYHVPPGNYVGSYPAVTGLQHPMPYPTGMISPRPMNTSSGSVSPASGNNNSAASSGGNKNSGGQVEGPPGANLFIYHIPQEFGDQELANAFQPFGIVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAINMMNGFQLGGKKLKVQLKRDNKQGKPY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02595 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Spst1g02595 431 PANTHER RNA BINDING PROTEIN 14 425 - -
Spst1g02595 431 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Spst1g02595 431 FunFam RNA-binding protein BRN1 313 423 - -
Spst1g02595 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Spst1g02595 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Spst1g02595 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Spst1g02595 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Spst1g02595 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Spst1g02595 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Spst1g02595 431 CDD RRM1_2_CELF1-6_like 16 92 - -
Spst1g02595 431 Gene3D - 101 192 IPR012677 -
Spst1g02595 431 FunFam RNA-binding protein BRN1 2 99 - -
Spst1g02595 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Spst1g02595 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Spst1g02595 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Spst1g02595 431 Gene3D - 310 423 IPR012677 -
Spst1g02595 431 MobiDBLite consensus disorder prediction 185 209 - -
Spst1g02595 431 MobiDBLite consensus disorder prediction 302 341 - -
Spst1g02595 431 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Spst1g02595 431 Gene3D - 2 100 IPR012677 -
Spst1g02595 431 SUPERFAMILY RNA-binding domain, RBD 103 426 IPR035979 GO:0003676
Spst1g02595 431 CDD RRM3_CELF1-6 348 420 - -
Spst1g02595 431 MobiDBLite consensus disorder prediction 306 337 - -
Spst1g02595 431 SMART rrm1_1 104 179 IPR000504 GO:0003723
Spst1g02595 431 SMART rrm1_1 16 92 IPR000504 GO:0003723
Spst1g02595 431 SMART rrm1_1 347 420 IPR000504 GO:0003723
Spst1g02595 431 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02595 Spst-Chr1 34418932 34423862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02595 328 429 Eukaryotic Initiation Factors Gene Family AT2G23350 33.654 1.61e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02595 K13207 - gmx:100813239 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02595 1 34418932 34423862 Spst1g02595 1 34418932 34423862 ECH
Spst1g02595 1 34418932 34423862 Spst7g01153 7 35521174 35525589 PCT