Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02589 ATGGAAGCTGTAGCCAGAGACGGTGTTCCCCGTAACCAAGGCGTGACGGACGATTTGTACACTGAACTGTGGCGTGCATGTGCGGGGTCTTCAGTTTATGTTCCTCGCGTTGGAGAGAGGGTTTTCTACTTCCCTCAAGGTCACTTGGAGCAGGTTGTTGCATTTACTCAGCATCAGCAAGATGGTCACATGGAAATTCCTGTGTATGATTTGCCTTCCAAGATCTTATGCAGGGTTGTGTGTGTTCAGTTACAGGCCGAAACTTACACTGATGAGGTTTTTGCTCAAGTTACACTAGTTCCGGAGCCTAGGCAAAATCACCTTGGTTTAGAGAACGACGATAATCATGTTCCTGGCAGAGCTGCAACCTACGCCTTTAGTAAAGTACTCACTCCATCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGAGACATGCTGATGAATGCTTCCGTCCCCTGGACATGACTCATCAAACACCTGCGCAAGAAATTGTTGCGAAGGACTTGCACGGATTTGAGTGGCATTTTCGACACATATACCGCGGTCAGCCGAAGCGACACTTGCTGACTAGCGGTTGGAGCACATTCGTGAATGCAAAGAAACTTGTTGCTGGAGATTCATGTATTTTTGTTAGTGGGGAGTATGGAGAAGTTCGTGTTGGAATTCGTCGGGCAACTAGACATCACAGCAATGCATCCCCGTCTTCGTCTCTGATATCGGGTCATAGCATGCAACTCGGAATTTTGGCTAGTGCTTCCCATGCTGTTGCCACAGGATCCATGTTCACTGTCTATTACCATCCTTGGAAGAATCCCTTTGAATTTATTATTCCTTTGCAAAAGTATTTGAAGTCAACTATACCCGACTATTCAATTGGAACGAGAGTACAAATGCAGTGTGATGTTGAAGAGTCTTTAAGAAGATATGCAGGTACGATAATTGGTAATGAAGTTATTGACAGCATTAGGTGGCCTGGTTCTGAATGGAGATGTCTGAAGGTGCAATGGGATGTCATAGTAGATTTCTTCTTGCACCCTGAAAGGGTTTGTCCTTGGTGGATTGAGACCTTGGAATCTTCCAAGGAGCCTCACATTCCTGTTCTCCCCAACTCCAAAAAGGCACATCTACTTAACCAGCGCCCTTTGCCTGGATTAAGTGTCTTTGCCATGGATGATGTTGTTCAGAATTCAGCCAAGCCGGCTTCTCACCCTCACAGAGCGCATAGGGACTTGCAAGGACAAGATTACAGTGGCCTGTGTACTTCACGGCCTTTTCAAAGACCACCATCGAAGTTCTCAATCGGTGGCTCACAATTTGGGAAGGAGAATCTGAATCAGCTTCCCTTTCTCATGCAAGATCTTCTTCATAAATCTATTGGAAGATCAAATTCATTGCCCCATGAAGACTTGTCAATTTCAAGTTCAAATTTAAGCTCCATTTGTTCTGAATCTTTGGGATGGCCACCTTCTGAATCTAGAAATGAAAATGATGCACCCTTTGGTCATCTTGGCAGTTGTAGTAAATACAAGCTTTTTGGAGTTAGCTTGATTGACCGCCAGCCGGAGCTCCCTTCACCACAACGCGCTGGTTTCAGCAAGACTTCAAGTCTGCTTTCTAGTCCTCCAACGTGTGTTACCTCCGAGAAAACATGTAAAAAGTGTCACTCTGTCAACAATCGCAGCTGCACAAAGGTGCTTAAGCTGGGAACTGCTCTTGGAAGAGCAGTTGATCTCACCCGTTTTCATGGATACGATGAACTCATTGCTGAGCTCGACTCGATGTTTGATTTTGGAGGAAGCTTAAGCAATGGAAGCAGTGGATGGCACGTGACCTGCCTAGATGATGATGGAGACATGATGGATTTCCAGTGTATGGTGCAAAAGATGATCATATGCCAAAAGGATGGGATTAACAATCTCAATCCAAGCTCCTCAGCAGATCCTCCAAGCCTTCAGTGA 1965 0.455 MEAVARDGVPRNQGVTDDLYTELWRACAGSSVYVPRVGERVFYFPQGHLEQVVAFTQHQQDGHMEIPVYDLPSKILCRVVCVQLQAETYTDEVFAQVTLVPEPRQNHLGLENDDNHVPGRAATYAFSKVLTPSDTSTHGGFSIPKRHADECFRPLDMTHQTPAQEIVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFVSGEYGEVRVGIRRATRHHSNASPSSSLISGHSMQLGILASASHAVATGSMFTVYYHPWKNPFEFIIPLQKYLKSTIPDYSIGTRVQMQCDVEESLRRYAGTIIGNEVIDSIRWPGSEWRCLKVQWDVIVDFFLHPERVCPWWIETLESSKEPHIPVLPNSKKAHLLNQRPLPGLSVFAMDDVVQNSAKPASHPHRAHRDLQGQDYSGLCTSRPFQRPPSKFSIGGSQFGKENLNQLPFLMQDLLHKSIGRSNSLPHEDLSISSSNLSSICSESLGWPPSESRNENDAPFGHLGSCSKYKLFGVSLIDRQPELPSPQRAGFSKTSSLLSSPPTCVTSEKTCKKCHSVNNRSCTKVLKLGTALGRAVDLTRFHGYDELIAELDSMFDFGGSLSNGSSGWHVTCLDDDGDMMDFQCMVQKMIICQKDGINNLNPSSSADPPSLQ 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02589 654 CDD B3_DNA 126 226 IPR003340 GO:0003677
Spst1g02589 654 SUPERFAMILY DNA-binding pseudobarrel domain 119 256 IPR015300 -
Spst1g02589 654 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Spst1g02589 654 Gene3D - 558 642 - -
Spst1g02589 654 Pfam Auxin response factor 254 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst1g02589 654 Gene3D - 124 228 IPR015300 -
Spst1g02589 654 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Spst1g02589 654 ProSiteProfiles PB1 domain profile. 562 647 IPR000270 GO:0005515
Spst1g02589 654 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst1g02589 654 FunFam Auxin response factor 124 228 - -
Spst1g02589 654 SMART B3_2 126 228 IPR003340 GO:0003677
Spst1g02589 654 Gene3D - 291 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02589 Spst-Chr1 34388777 34396086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02589 560 646 B3 DNA Binding Superfamily AT5G62000 43.158 6.67e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst1g02589 B3 9.4e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02589 - - gmx:100802387 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02589 1 34388777 34396086 Spst1g02589 1 34388777 34396086 ECH