Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02581 ATGACCGCTGAAGCGCCGACACCAGCGCGACCCTGCGATTACTGTGGCCACTCAACGGCGGTTCTCTACTGCAGAGCCGATTCAGCCAAACTCTGCTTCTCGTGCGACCGCGAGGTTCACTCCACCAACCAGCTCTTCTCGAAGCACACGCGTACGCTGCTCTGTGACGCGTGCGATGATTCCCCTGCCACCATACTCTGCTCCACTGACACCTCTGTTCTCTGTCAGAACTGCGACTGGGAGAAGCACAACCCCTCGCTCTCCAATTCCCTTCACCAACGGAGGCCCCTCGAAGGCTTCACCGGTTGCCCTTCCGTCTCCGAACTCTTATCCGTCATGGGGTTTGGAGATCTCAGCAAAAAATCGCTGCTTTCTTCGCCTCAGGGAAGTGCTGCTGATGGGTTCCTCGGGTGTGAGATGGAAGGGCTTTCTGATTTGTTCGTTTGGGATGCGCCTTCTCTTGTTACTCTTGATGATTTGATTTGTTCTTCCGCTGCTTCTCATAGCTTTCAGGCCATGGAGGTTCCTCCCCTGCCTAAGAATCGGAAGGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGAGAATTGGCAAAGTCTGAACCATTGGATCTTGACCAATATGTGCAACCAGGAAACTTGTCCTCGGGATTTGAACCTGACGTGGAGTTTGATATCTTTCCTTCTCGCGAGTGGCATAGAGAAAGCAGTGAGCCTATGTATCAAGTTGTTCCTCCTGACCCATCATTGAGAACTTATACTGAAGAAATTTCAGTTAAACAATCTACTTCTGCTGTTGGGGAAACTCAGACCTATGTTGACAATGGAGGGAAACCATCCATTTCTATCAAGTCTGAAACCCAACTAACTACTCCCAAAGCTGCTGCATGTGAGTTAACCAGTCAAGAAAGAGATTCTGCGTTGTTACGGTATAAACAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGGTATGAATCACGAAAAGTTCGGGCAGAAAGCAGGGTGAGAGTCAAGGGCCGGTTTGCCAAGATGGAGTAG 1053 0.4976 MTAEAPTPARPCDYCGHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTDTSVLCQNCDWEKHNPSLSNSLHQRRPLEGFTGCPSVSELLSVMGFGDLSKKSLLSSPQGSAADGFLGCEMEGLSDLFVWDAPSLVTLDDLICSSAASHSFQAMEVPPLPKNRKAACGRHREEILSQLRELAKSEPLDLDQYVQPGNLSSGFEPDVEFDIFPSREWHRESSEPMYQVVPPDPSLRTYTEEISVKQSTSAVGETQTYVDNGGKPSISIKSETQLTTPKAAACELTSQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKME 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02581 350 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 11 349 - -
Spst1g02581 350 Pfam CCT motif 307 349 IPR010402 GO:0005515
Spst1g02581 350 SMART bboxneu5 7 54 IPR000315 GO:0008270
Spst1g02581 350 SMART bboxneu5 55 97 IPR000315 GO:0008270
Spst1g02581 350 Pfam B-box zinc finger 54 97 IPR000315 GO:0008270
Spst1g02581 350 Pfam B-box zinc finger 9 52 IPR000315 GO:0008270
Spst1g02581 350 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Spst1g02581 350 CDD Bbox1_BBX-like 11 54 - -
Spst1g02581 350 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Spst1g02581 350 CDD Bbox1_BBX-like 54 97 - -
Spst1g02581 350 ProSiteProfiles CCT domain profile. 307 349 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02581 Spst-Chr1 34337310 34340612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02581 10 322 C2C2-CO-like Transcription Factor Family AT2G47890 39.375 3.27e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Spst1g02581 CCT 1.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02581 - - gmx:100817838 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02581 1 34337310 34340612 Spst1g02581 1 34337310 34340612 ECH
Spst1g02581 1 34337310 34340612 Spst7g01141 7 35352410 35355363 PCT