LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g02570	ATGGTGGAAAGAAGAAGAAAGCCTCTGATACTGTGTTCCACTAAACATGTCATCAATTCCACTGTTCCAACCACCAATCTCTTCAACCATGATTCTTCTCCCTCCTTCTTCCGTTTTCCCGTTGGAATCCTCCGATTCTCCAACGTCACAAATCCCTCTCTTGACCACTCTTCCCTCCTCGCCCTCTCCACCCCTCTTCTTAAAACCCTCTCCATCACTGCAGGCTCACCGGTTCTTGTCAAGAATGTTGACACAAACACACAGAAAATTGCAGTGGCTATTGCTCTTGATCCACCAGGCACCACCACTAATTCAGACTCTCCTTCTTCTTCTATTTCTTCTTCTCAAATAATGCTTCTTTTTCCTTCTTGTTATTTTCCTTTTAATGGTTCTGAGTTGGATGATCAAATAGCTTTTGTATCTCCTCTCTTAGCCTTTAACCTTAACTTGCACGTGACGTGCTTAAAATCCATTCTTCGCCACGGACAAGAGGCTTTGGCTTCTTATTTCGAACCTCAAGGTAAAAGGGGTGATGAGAACGCTGCTAAACGCACCGTGGATTCTGTCATCAACGTGGAATTGGAACCACTTGCTCTGCCTCCAAAATTTGCCTCTCTTCTGAGGGTTTCTTTTGTGAAGATACCAGAATGTGGCATCCTTGAATCCATTAGAGCAAGTTCACCTTTTGAGTCACAAGAGCGGCAAGACATGATCGACTTAGCATTGCGAAAGTACTTTGAAGTCGATAGATACTTGTCCAAGGGAGATGTTTTTGGGATTAACATAAGTTGGAACTGCAATTCCCCCATTTGCGTTCCTTGTAATCAAAGATCATTAAATAAAAATGACAATCTTATCTGTTTCAAGGTTGTTGGTATGGAACCATCAGATGAACCGGTTTTTCGTGTCAATAGCACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCTCCATCCGCACTCCCTCCAGATTTGTTAATTGGTGGACCTGAAGGACCTGTGCCTTTGCGAGGGGACACTGTGAACATATTGGCTTCCATACTTACACCAACTTTCTGTCCATCAGTTCTTTCTTCCAAGTTTAGAGTTTCTGTACTATTGTATGGCTTGGCAGGTTGTGGGAAGAGGACTGTTGTTAGATATGTTGCTAGTCGACTTGGCCTGCATGTGGTGGAATATAACTGTCACGATCTTATGGTATCTGAAAGAACATCTGTTGCTCTAGCACAAGCTTTCAAGACGGCTCGAAGATACTCACCAGCAATTCTTCTTCTTCGTCATTTTGATGTTTTTCGAGAATCTCAATCGCCCGAGAGTTCACCACAAGACCAAAGAGGGAATACATCTGAAGCTGCATCTGTTATTAGGAAATTCACTGAGCCAGTCAGTGAACATGATGATAGTAATTCCCTGGGGAAATCACACGTTGAATCTGTGGAGAAGAATGTTGAAAAGGCAAGTGGGCATCAGGTCCTATTGATAGCTGCTGCTGACAGTTCAGAAGGTCTGCCTTCAACTATCAGACGCAGTTTTAGCCATGAAATAAGCATGGGGCCTTTGACTGAAGAGCAAAGAGCTGAAATGTTATTACAGTCATTGCAAAGTGTTTCTGAACTCCTCTCCAATACTGATTCAGAAGCTTTAGTAAAAGAAATAGTTGGACAGACATCTGGTTACATGCCCAGGGATATACGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTTCCAGAAATAAAGCTAAAGTAGACAAAGATGTATCTGATGATGTAGATAGTTCTTCTAATTCCAAGAAGGCAGAGGACGATAATCACAGGAAAGTTTCACATCAGATTCCTGGGAAAGAAGACTTGTTGAATGCTTTGGAGCGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCAAACGTGAAATGGGAAGATGTTGGTGGGCTAGAAGATGTCAAAAAATCAATTCTGGATACTGTTCAGTTACCTCTCCTGCATAAAGATCTATTTTCATCTGGATTACGCAAGCGATCTGGTGTTCTTTTGTATGGACCCCCTGGTACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACAGAATGTTCCTTAAATTTTCTTAGTGTGAAGGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAAAAGAATGTTCGAGACATTTTCCAGAAGGCCAGATCAGCACGTCCATGCGTCATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGTGCTTCTGGAGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAAATTGACGGCTTAAGTGATTCAACACAGGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCACTTCTGCGCCCTGGTCGATTTGATAAACTACTATATGTTGGAGTTAACTCTGATGCATCTTACAGGGAACGGGTGCTGAAAGCTCTTACACGAAAGTTCAAATTGCATGAAGATGTCTCACTTTACTCCATTGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATGTATGCGTTGTGTGCAGATGCTTGGTTCCATGCTGCAAAGCGTAAAGTTCTGAGTGCAAATCCAGAGTCTTCCACCAAAGATAATGAAGAAGATTTTGTTGTTGTTGAATACAATGACTTTATCCAGGTCTTAGAAGAGCTGTCGCCTTCCCTCTCTATGACTGAGCTTAAGAAGTACGAGAAACTGAGAGATCAGTTTGAAGGCACCACTAAATGA	2778	0.4248	MVERRRKPLILCSTKHVINSTVPTTNLFNHDSSPSFFRFPVGILRFSNVTNPSLDHSSLLALSTPLLKTLSITAGSPVLVKNVDTNTQKIAVAIALDPPGTTTNSDSPSSSISSSQIMLLFPSCYFPFNGSELDDQIAFVSPLLAFNLNLHVTCLKSILRHGQEALASYFEPQGKRGDENAAKRTVDSVINVELEPLALPPKFASLLRVSFVKIPECGILESIRASSPFESQERQDMIDLALRKYFEVDRYLSKGDVFGINISWNCNSPICVPCNQRSLNKNDNLICFKVVGMEPSDEPVFRVNSTLTALVLVGSSPSALPPDLLIGGPEGPVPLRGDTVNILASILTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVASRLGLHVVEYNCHDLMVSERTSVALAQAFKTARRYSPAILLLRHFDVFRESQSPESSPQDQRGNTSEAASVIRKFTEPVSEHDDSNSLGKSHVESVEKNVEKASGHQVLLIAAADSSEGLPSTIRRSFSHEISMGPLTEEQRAEMLLQSLQSVSELLSNTDSEALVKEIVGQTSGYMPRDIRALIADAGANLFSRNKAKVDKDVSDDVDSSSNSKKAEDDNHRKVSHQIPGKEDLLNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSANPESSTKDNEEDFVVVEYNDFIQVLEELSPSLSMTELKKYEKLRDQFEGTTK	925

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g02570	925	Pfam	ATPase family associated with various cellular activities (AAA)	679	811	IPR003959	GO:0005524\|GO:0016887
	Spst1g02570	925	Pfam	ATPase family associated with various cellular activities (AAA)	364	515	IPR003959	GO:0005524\|GO:0016887
	Spst1g02570	925	Gene3D	-	637	914	IPR027417	-
	Spst1g02570	925	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	638	919	IPR027417	-
	Spst1g02570	925	PANTHER	AAA-FAMILY ATPASE	58	922	-	-
	Spst1g02570	925	MobiDBLite	consensus disorder prediction	583	616	-	-
	Spst1g02570	925	FunFam	Peroxisome biogenesis protein 6	813	899	-	-
	Spst1g02570	925	Gene3D	-	342	541	IPR027417	-
	Spst1g02570	925	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	339	587	IPR027417	-
	Spst1g02570	925	CDD	RecA-like_PEX6_r2	651	810	IPR047533	-
	Spst1g02570	925	FunFam	Peroxisomal biogenesis factor 6	637	826	-	-
	Spst1g02570	925	SMART	AAA_5	360	520	IPR003593	GO:0016887
	Spst1g02570	925	SMART	AAA_5	675	815	IPR003593	GO:0016887
	Spst1g02570	925	ProSitePatterns	AAA-protein family signature.	782	800	IPR003960	GO:0005524\|GO:0016887
	Spst1g02570	925	FunFam	Peroxisome biogenesis protein 6	333	517	-	-
	Spst1g02570	925	Gene3D	-	813	899	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g02570	Spst-Chr1	34262376	34273261	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g02570	645	870	Calmodulin-binding Proteins	AT3G56690	39.648	3.63e-40	159

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g02570	K13339		-	gmx:100820183	1554.27