Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02564 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGGGAAGAAGTTCATCAAGAAAGCCAACACCAACAGCTACAAAACCAACTTCATGACTCTGGTTCAGGACCATCCGCTGCTTGCAATAGCAATGCTTCCACTAATCAACAAACCAGCAAGAAGAAAAGAAACCTTCCTGGAACCCCAGACCCCAGTGCTGAAGTAGTTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAAAGGGACCAAAACCTTCAGTTGCACCGTAGAGGTCACAATCTTCCGTGGAAACTGAGGCAACGGACAAGCACTGAGGTGAAGAAACGGGTGTATGTGTGCCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATAAAAAAGCATTATAGCCGCAAACACGGTGAAAAGAAATGGAAATGTGACAAGTGCTCTAAGAGATATGCAGTGCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACCAGGGAATACAAATGTGACTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACCCACAGAGCCTTCTGTGACGCATTAACTGAAGAAAACAACAGAGTGAACCAGGGATTAACAAGTGGCATGCCACCAAACCTGCAAAGTCAAATACCTGATCTTATGTCTACCATGCCTCTAAACACTAGTCCCAACACAGCGTATGACCCTAAGAACCCACTAAAATCACTCCCCCAAGAACTTGTCCCAATACCATTCAAGTCTATGAGCATGGGAGGGGGCATGTTCTCCACCAATGCAGGTGCACTTTTTGGTGGCCCAAAAAGCATGCCTCCCTCCTCTTCCAGCCTCCAGCTAGGTTCCAACACCTCATCAAGTTTCAATTACTTGCAAGACAACAAGAACGGAGGACTAATTGCTGCCTCAGCCCAGATGTCTGCAACAGCTTTGTTACAGAAAGCAGCCCAAATGGGTGCCACTGCAAGCAATAACATTAACTCCCCCATATTGCAAAAAGGCTTTGTTAGTAGCACTTCTGCTCCTGATCACGTTTCTTCCACTAGGCCACCATATTCTGGTGCCATGCTGCAGCATAACAACTCCTATGACCACTTCTCTCCACAGCCTGATCTGTCCAACATGGCTGGGGTGAGTGGTGGAGGAGCATTCATCAATCAATTGTTTCATAAAGGACAAGAAATTTCACAAGTTTTTGACACCAACACTGCCGGGTCTACAATCAATGATGTGGGAATGTTCAGCCAAATGCCACTTGGGAGCGACCACAACCCTGGATTGATGAAGAATGTGGAACAAGAGGTTAGTAATACTTCGAGTTTAATCCACGGAAGAGACATGGTTGAAGGAAACCAAATGCAGCCATCAAGGTTTGGAGGGAGCGACATGACAACTGTTCATGACTTTTTGGGCATTGGTAGTTCAACTTCAAGAGTTATGAATCATTTTCATCACCATTTTCCACACGAGGATTCAGCTATGGAGGAACCCATGTGGGATGTTTGA 1575 0.4565 MSNISGDEGSFSSGNNGEEVHQESQHQQLQNQLHDSGSGPSAACNSNASTNQQTSKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQIPDLMSTMPLNTSPNTAYDPKNPLKSLPQELVPIPFKSMSMGGGMFSTNAGALFGGPKSMPPSSSSLQLGSNTSSSFNYLQDNKNGGLIAASAQMSATALLQKAAQMGATASNNINSPILQKGFVSSTSAPDHVSSTRPPYSGAMLQHNNSYDHFSPQPDLSNMAGVSGGGAFINQLFHKGQEISQVFDTNTAGSTINDVGMFSQMPLGSDHNPGLMKNVEQEVSNTSSLIHGRDMVEGNQMQPSRFGGSDMTTVHDFLGIGSSTSRVMNHFHHHFPHEDSAMEEPMWDV 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02564 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Spst1g02564 524 Gene3D Classic Zinc Finger 63 131 - -
Spst1g02564 524 MobiDBLite consensus disorder prediction 1 70 - -
Spst1g02564 524 Gene3D Classic Zinc Finger 139 219 - -
Spst1g02564 524 MobiDBLite consensus disorder prediction 1 61 - -
Spst1g02564 524 SMART c2h2final6 126 156 IPR013087 -
Spst1g02564 524 SMART c2h2final6 85 107 IPR013087 -
Spst1g02564 524 SMART c2h2final6 161 181 IPR013087 -
Spst1g02564 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 501 IPR031140 -
Spst1g02564 524 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Spst1g02564 524 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Spst1g02564 524 FunFam protein indeterminate-domain 12-like 64 132 - -
Spst1g02564 524 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Spst1g02564 524 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02564 Spst-Chr1 34180447 34182864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02564 54 363 IDZ Gene Family AT3G50700 55.000 3.14e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g02564 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02564 - - gmx:100782774 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02564 1 34180447 34182864 Spst1g02564 1 34180447 34182864 ECH