Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02561 ATGGTGAAGATGAAGATGAAGGGGAAAAGCCACAAGATTGGAAAGAAGCAGAGTAGGAAGATGAAGGGCGCGTTGTGTAACACCACCACCAGGCACTTGCAGCTTCAGCTAGGTCAAGTCTCCCTCATTCCTCTCCACCAACCATCTTCCACCACTTCTTCCACTGTTTCTTGCTTCCAGAACCTTCTCGATGCCGAACCTTCCAACGCTTCTTCATCGCGCGTTGCGCTCACCGACGATGCCGTCGCTGTCGCCGACGACAGAGACTGTATTCTCAGTCAGGACTTCTTCTGCACTCCTGATTATATCACTCCGGATAATCAGCATATCTTGAATGGCTTTGATTGCGACAGGGATAATACTCCTTGCCCCAAATCCCCCGAGAAGCTTAACACTACGAAAAGCAAGAGATGCCGACTAGACGCTATGTCCGTTCAACCTCTCAGTCCTACCTTCTCTAGTGACCATCAGCCAGCTGTGGAACTGGGAAAGGATTCTGTTACAGACGAATTTGCTTCTGAGAAAACAATAGCATCTACTAAACCAAAGGGTCAGAATTACGTGTCCCAATCTGCAGTTGCATTGCGTTGCCGGGTTATGCCTCCTCCTTGCTTTAGGAACCCATATTTAAAAGATGTCTCAGAGAAGGAGATAGATCCTTTTGGAAACCAAAGATTGAAATTTGCAGGTCTCTTCCCTGCATGTAGTGGTGGTGATGGGCTTTCACGCTATCGCGCTGACTTTCATGAAATTGAGCAAATTGGTAGAGGAAACTTTAGTAATGTTTTCAAAGTATTAAAACGAATAGATGGCTGCTTGTATGCTGTTAAACAAAGCATCAGACCGTTATGCCTGGAAGCAGAAAGGACAAAAGCTTTGATGGAAGTTCAAGCTTTGGCGGCCCTAGGTTTGCATCAGAACGTTGTGGCCTACTATTCTTCATGGTTTGAAAATGAACAGTTGTACATTCAGATGGAGCTATGTGATCACAGCTTATCCATAAGAAAATGCTCTGCGGTAATTACAGAAGCACAAGTGTTAGATGCCTTATTTCAGGTTGCCAGTGCACTGCGATTTATTCACGAGAAGGGAATGGCTCATCTAGATGTCAAACCCGACAATATTTATGTGAAAAATGGTGTTTATAAGCTTGGTGATTTTGGATGTGCGACTCTTCTTGATAGTAGCCTGCCAATTGAGGAGGGTGACGCACGCTATATGCCGCAGGAAATACTTAATGAAAATTATGATCACCTTGACAAGGTTGATATCTTTTCCTTGGGAGCTTCTATTTATGAACTAATTCGCAAAGTGCGTTTGCCAGAATCAGGATGTCAATTTTTTAATCTCAAAGAGGGCAAGTTTCCCCTCTTGCCTGGTCATTCGTTGCAACTTCAAAACTTGCTCAAGGTCATGATGGACCCTGATCCAGTTAAGCGGCCTTCTGCTAAAGAATTGGTAGAAAACCAAATTTTTTGTAGGGTTCAAAGAACTGAACGAAGTTGA 1506 0.4416 MVKMKMKGKSHKIGKKQSRKMKGALCNTTTRHLQLQLGQVSLIPLHQPSSTTSSTVSCFQNLLDAEPSNASSSRVALTDDAVAVADDRDCILSQDFFCTPDYITPDNQHILNGFDCDRDNTPCPKSPEKLNTTKSKRCRLDAMSVQPLSPTFSSDHQPAVELGKDSVTDEFASEKTIASTKPKGQNYVSQSAVALRCRVMPPPCFRNPYLKDVSEKEIDPFGNQRLKFAGLFPACSGGDGLSRYRADFHEIEQIGRGNFSNVFKVLKRIDGCLYAVKQSIRPLCLEAERTKALMEVQALAALGLHQNVVAYYSSWFENEQLYIQMELCDHSLSIRKCSAVITEAQVLDALFQVASALRFIHEKGMAHLDVKPDNIYVKNGVYKLGDFGCATLLDSSLPIEEGDARYMPQEILNENYDHLDKVDIFSLGASIYELIRKVRLPESGCQFFNLKEGKFPLLPGHSLQLQNLLKVMMDPDPVKRPSAKELVENQIFCRVQRTERS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02561 501 ProSitePatterns Protein kinases ATP-binding region signature. 254 277 IPR017441 GO:0005524
Spst1g02561 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 365 377 IPR008271 GO:0004672|GO:0006468
Spst1g02561 501 SMART serkin_6 248 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02561 501 Gene3D Phosphorylase Kinase; domain 1 239 326 - -
Spst1g02561 501 ProSiteProfiles Protein kinase domain profile. 248 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02561 501 FunFam WEE protein kinase 238 326 - -
Spst1g02561 501 Pfam Protein kinase domain 248 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g02561 501 SUPERFAMILY Protein kinase-like (PK-like) 241 495 IPR011009 -
Spst1g02561 501 Gene3D Transferase(Phosphotransferase) domain 1 327 496 - -
Spst1g02561 501 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 121 492 - -
Spst1g02561 501 FunFam Wee1-like protein kinase 327 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02561 Spst-Chr1 34162337 34165506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02561 1 496 Core Cell Cycle Gene Families AT1G02970 58.800 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Spst1g02561 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02561 K06632 - gmx:547742 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02561 1 34162337 34165506 Spst1g02561 1 34162337 34165506 ECH