Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02542 ATGTCCGTCGCAGCTTCAACATGGATAACATCCCTCTCATGTACATTCCCTGTGAAGCAAACCTCAGGGGACACGTTTATCTCAACAATGCTGCAATGCCTGAGATTTCTCTTCCTCTCGCCATGTCCTCAAAGAGCTATATTATCTTTCCTGGATGTCATGCTCCTCTTGTTTCTCTTCGTGTTTGCTGTCACCAAGCTCTGGAAAAGGTTCACCTCCGGTGCCGGTTTCGCCACTCACCTCAATGAGCCACTCGTCAGAAGTAACCGATGCATTTTCTTAACAACTATTCGCTTCAAGCTATCCTTAACCGCAGAGGTTGTTTTAACTATACTTTACACGGTTGCTAGCGTTCTTGCGTTTAGAAGTTCCTCCAAGGTGCCGTGGAAACAAGTTGACGACGCATTTTGGTTAGTCCAGGCCATAACGCATGTGGTGCTTGTAGTCTTAATCATCCATGAGAAAATATTTGAAGCCGTTACCCACCCTCTTACAGTTCGAGTTTATTGGATCGTGAATTTCTTTGTCACTTCGTTGTTCACGGTTTCTGCGGTTATGCGTTTGGTCACCGTGTACGTGAGTGAAAGAAACGACTTCATTGTGGATGACGTGGTCTTTTTCATTTCACTTCCTCTGTCGTTAATTCTTCTTTTTGCTGCGGTTAAAGGGACCACCGGCATTGTTTTGTCGACAGAAGAAATTCAAAAACCTTTTTTCGAGGAAACCAAATTGTATGATGGGAGTGAGAGAAAATCTGAGGTTACTGGCTTCGCTTCAGCTTCTATATTATCTAAGGCTTTTTTGACTTGGATTAATACCTTGTTGCGTAAAGGGTACAAGTCCGCACTGAAGACTGATGATGTTCCAACGCTTTCTCCACAGCATAGAGCTGAGAGAATGTCGTCTATTTTTGAATCAAAATGGCCTCAACCAAACGACACATCAAAGCATCCGGTTAGAATGACTTTGCTTCGGTGCTTTTGGAAGGAGATAGCCTTCACTGCCTTCCTTGCATTCATTAGGCTCTGTGTCATGTTTGTCGGGCCAGTTCTAATACAAAGTTTTGTTGATTTCACATCAGGGAAGAGAAGGTCTGAATATGAAGGATACTACCTCGTGTCGATTCTTCTCATTGCTAAGTTCATTGAAGTCATGGCTTCTCATCATGTCAACTTCCAATCTCAGAAGCTTGGGACGCTTATACGGAGCACTCTTATCCCCGCTTTGTATGAGAAAGGGTTAAAACTATCATTCTCCGCTCGGCAGGATCATGGGATGGGAACCATTGCGAATTACATAGCTGTTGATACCCAGCAACTCTCTGACATGATGCTTCGGCTAAATACTGCGTGGATGATGCCACTTCAGGTTGCCATTGGCTTGGTTCTGCTTTACAATTGCCTTGGTGCTTCAGTGATCACCGCGTTTCTTGGTCTTCTTGGTGTTTTTGTGTTTGCTGTGATTGGTACCCGTAGGAACAATCACTTTCAATATAATGTAATGGGGAACCGTGACTCAAGAATGAAAGCTATGAATGAGACGCTTAATTACATGCGCGTGATCAAATTTCAGGCCTGGGAGGATCATTTCAACCAGAGAATTATGGGATTCCGTCAGACCGAGTTTGGATGGCTCTCCAAGTTTATGTTCACTACATGTGCCAATATGGTTTTGATGTGGAGCGCGCCCTTGTTGATATCAACTCTCACGTTTGGTACGGCTATTTTTCTGGGAGTTCAACTTGATGCTACAACGGTCTTCACAACGACAGCCGTGTTCAAGATATTGCAGGAGCCTATTACAACATTCCCACAGTCTATGATATCTCTCTCACAAGCATTGATATCACTGGAGAGGATAGATAAGTTCATGTTGAGCAGGGAATTGTTGGATGATTCAATTGAGCGAAAAGAAGGATGTGATGGACAAACAGCAGTGGAAATCGCAGATGGGACTTTTAGTTGGGATGATGGTAACACGCAGCAGGACTTGAAAGATATTAATTTGGAGATAAAAAAGGGGAATGTTTCGGCTATTGTTGGGACTGTAGGATCAGGAAAGTCCTCTCTCCTCGCATCCATTCTTGGAGAGCTGCGTAAGATTTCTGGAAAGGTTCGGGTTTGTGGGAGTGTTGCTTATGTTGCACAAACATCTTGGATTCAAAATGGGACCATTGAAGAAAACATTCTCTTTGGTTTACCTATGGACAGACAGAGGTACAATGAAGCTATCAGGGTGTGTTGTTTGGAGAAAGATTTGGAAATGATGGATTATGGGGATCAGACAGAAATTGGAGAGCGTGGTATCAACCTGAGTGGAGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTGTATCAAGACTGTGATGTATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGTTCTGAAATATTTAAGGAATGTGTAAGGGGAGCTCTGAAAGGCAAGACCACTCTTCTTGTAACGCACCAAGTAGATTTCTTACATAACGTGGATCAAATATTTGTGATGAGGGACGGTATGATAACCCAATCAGGAAAGTACGATAATTTAGTAGAATCTGGAATGGATTTTAAAGCTCTGGTGGTTGCACATGAGACCTCCATGGAACTGGTAGAGCAGAGTGTGGTCATGCCTGCTGAAAATTTCAACAAGCCAACGAAATCTCCAGAGGTGGCTTCTATTTACAAGGGAGCCAATGGTGAAAGCAATTCTCTTGAGCAGGCCAGATCTAGCAACAAAAGTTCTAAACTCATCAAAGAAGAGGAAAAAGAAATCGGCAAATTGAGCTTACATATCTATAAACTCTACTTCACTGAGGCTTTTGGGTGGTGGGGTATTGCATTAGTATTGGTTCTTTCTTTGTTATGGCAAGGGTCTTTGATGGCAAGTGATTACTGGCTGGCGTATGAAACTTCAGAAGAAAGTGGAATAGTTAATCCTTCTCTGTTCATCTCCATCTATGCAATTATTGCCGCTGTTTCGGTTATCTTGGTAGTGATGAGATGTTACTTCTTTACAATATTGGGGCTAAAGACAGCACAAATTTTCTTCGCACAAATTCTTCGTAGCATCTTGCATGCGCCTATGTCTTTCTATGACACTACTCCCTCTGGAAGAATTCTAAGCAGGGCATCCTCTGATCAGACTAATGTTGATGTCCTTCTTCCCTTGTTCACGGGAATTCTTATTTCCTCTTACGTTACAGATTATTATCTTGCATCATCTCGTGAATTAACTCGTTTGGATTTAATTACCAAAGCACCAGTTCTTCATCACTTCTCTGAAAGCATTGCAGGGGTCATGACAATTCGTGCATTTAGACGGCAGAAGAATTTTTGTCAAGAAAATCTCAAACGGGTGGATGATAATTTGCGTATGGATTTTCACAACTATAGCTCCAATGTGTGGTTGGGAATACGCTTAGAGTTGCTTGGAAGCTTTGTCCTTTGTATTTCTGCCATGTTCATGATCATCTTACCCAGTAGTATCATAAAGCCAGGTAAATTGATTCAGGAAATCTAA 3540 0.4254 MSVAASTWITSLSCTFPVKQTSGDTFISTMLQCLRFLFLSPCPQRAILSFLDVMLLLFLFVFAVTKLWKRFTSGAGFATHLNEPLVRSNRCIFLTTIRFKLSLTAEVVLTILYTVASVLAFRSSSKVPWKQVDDAFWLVQAITHVVLVVLIIHEKIFEAVTHPLTVRVYWIVNFFVTSLFTVSAVMRLVTVYVSERNDFIVDDVVFFISLPLSLILLFAAVKGTTGIVLSTEEIQKPFFEETKLYDGSERKSEVTGFASASILSKAFLTWINTLLRKGYKSALKTDDVPTLSPQHRAERMSSIFESKWPQPNDTSKHPVRMTLLRCFWKEIAFTAFLAFIRLCVMFVGPVLIQSFVDFTSGKRRSEYEGYYLVSILLIAKFIEVMASHHVNFQSQKLGTLIRSTLIPALYEKGLKLSFSARQDHGMGTIANYIAVDTQQLSDMMLRLNTAWMMPLQVAIGLVLLYNCLGASVITAFLGLLGVFVFAVIGTRRNNHFQYNVMGNRDSRMKAMNETLNYMRVIKFQAWEDHFNQRIMGFRQTEFGWLSKFMFTTCANMVLMWSAPLLISTLTFGTAIFLGVQLDATTVFTTTAVFKILQEPITTFPQSMISLSQALISLERIDKFMLSRELLDDSIERKEGCDGQTAVEIADGTFSWDDGNTQQDLKDINLEIKKGNVSAIVGTVGSGKSSLLASILGELRKISGKVRVCGSVAYVAQTSWIQNGTIEENILFGLPMDRQRYNEAIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDVYLLDDVFSAVDAHTGSEIFKECVRGALKGKTTLLVTHQVDFLHNVDQIFVMRDGMITQSGKYDNLVESGMDFKALVVAHETSMELVEQSVVMPAENFNKPTKSPEVASIYKGANGESNSLEQARSSNKSSKLIKEEEKEIGKLSLHIYKLYFTEAFGWWGIALVLVLSLLWQGSLMASDYWLAYETSEESGIVNPSLFISIYAIIAAVSVILVVMRCYFFTILGLKTAQIFFAQILRSILHAPMSFYDTTPSGRILSRASSDQTNVDVLLPLFTGILISSYVTDYYLASSRELTRLDLITKAPVLHHFSESIAGVMTIRAFRRQKNFCQENLKRVDDNLRMDFHNYSSNVWLGIRLELLGSFVLCISAMFMIILPSSIIKPGKLIQEI 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02542 1179 Pfam ABC transporter transmembrane region 333 599 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02542 1179 Pfam ABC transporter transmembrane region 954 1072 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02542 1179 CDD ABC_6TM_ABCC_D2 952 1169 IPR044726 GO:0140359
Spst1g02542 1179 Gene3D ABC transporter type 1, transmembrane domain 898 1074 IPR036640 GO:0005524|GO:0016020
Spst1g02542 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 866 IPR027417 -
Spst1g02542 1179 CDD ABC_6TM_ABCC_D1 333 620 IPR044746 GO:0140359
Spst1g02542 1179 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 953 1165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02542 1179 SMART AAA_5 673 851 IPR003593 GO:0016887
Spst1g02542 1179 Pfam ABC transporter 664 797 IPR003439 GO:0005524
Spst1g02542 1179 FunFam ABC transporter C family member 4 629 887 - -
Spst1g02542 1179 FunFam ABC transporter C family member 10 315 628 - -
Spst1g02542 1179 Gene3D - 625 887 IPR027417 -
Spst1g02542 1179 SUPERFAMILY ABC transporter transmembrane region 322 624 IPR036640 GO:0005524|GO:0016020
Spst1g02542 1179 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 646 869 IPR003439 GO:0005524
Spst1g02542 1179 SUPERFAMILY ABC transporter transmembrane region 949 1165 IPR036640 GO:0005524|GO:0016020
Spst1g02542 1179 CDD ABCC_MRP_domain1 646 845 - -
Spst1g02542 1179 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 258 1167 - -
Spst1g02542 1179 Gene3D ABC transporter type 1, transmembrane domain 311 624 IPR036640 GO:0005524|GO:0016020
Spst1g02542 1179 ProSitePatterns ABC transporters family signature. 771 785 IPR017871 GO:0005524|GO:0016887
Spst1g02542 1179 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 332 612 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02542 Spst-Chr1 34032990 34037504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02542 646 862 Calmodulin-binding Proteins AT2G36910 30.736 3.16e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02542 - K05666 gmx:100808752 1793.86