Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02541 ATGATGGTGTCTGTTGAGAGGATAAAGCAGTTTATAAATATTCCATCGGAACCAGCATGGAATATCAAGGATCATCTACCTCCTTCAAATTGGCCAGGTCAAGGCAGTGTTGATATCAAAGATTTGCAGGTCAGATATCGTCCAAACACTCCTCTGGTTCTGAAAGGAATTACTTTAAGCATTAGTGGAGGTGAAAAAGTTGGTGTTGTGGGTCGAACTGGTAGCGGAAAGTCAACTTTAATTCAAGTATTCTTTAGGCTGGTGGAACCTTCGGAAGGAAAAATAATAATTGACGGTGTTGACATATCCTTCTTGGGACTTCACGATCTTAGATCACGGTTTGGTATCATTCCTCAAGAACCAGTGCTTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATTGGAGAATATACAGATGAAGAAATATGGAAGGGCTTGGAACGTTGTCAACTAAAAGATGTTGTTGCTGCCAAGCCTGAAAAACTAGACTCTTTAGTGGTGGATAATGGAGAGAACTGGAGTGTGGGACAGAGACAGTTACTTTGTCTAGGGAGGGTTATACTTAAGAAAAGCCGACTTTTGTTCATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATGGTGTGATTCAGAAGATCATAAGAGAGGAGTTTGCATTATGCACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTGACAGAGTTTTAGTTGTTGATGCAGGGCGAGCGAAAGAATATGATAAGCCTTCAAATTTGCTTAAGAAGAAATCTCTCTTTGGGGCATTAGTTGAAGAATATGCCAACCGCTCCAGTGGACTATAA 840 0.4107 MMVSVERIKQFINIPSEPAWNIKDHLPPSNWPGQGSVDIKDLQVRYRPNTPLVLKGITLSISGGEKVGVVGRTGSGKSTLIQVFFRLVEPSEGKIIIDGVDISFLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGEYTDEEIWKGLERCQLKDVVAAKPEKLDSLVVDNGENWSVGQRQLLCLGRVILKKSRLLFMDEATASVDSQTDGVIQKIIREEFALCTIISIAHRIPTVMDCDRVLVVDAGRAKEYDKPSNLLKKKSLFGALVEEYANRSSGL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02541 279 SMART AAA_5 63 247 IPR003593 GO:0016887
Spst1g02541 279 CDD ABCC_MRP_domain2 35 255 - -
Spst1g02541 279 Pfam ABC transporter 54 202 IPR003439 GO:0005524
Spst1g02541 279 FunFam ABC transporter C family member 3 20 271 - -
Spst1g02541 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 270 IPR027417 -
Spst1g02541 279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 271 IPR003439 GO:0005524
Spst1g02541 279 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 272 - -
Spst1g02541 279 Gene3D - 20 270 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02541 Spst-Chr1 34026993 34032828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02541 34 262 Calmodulin-binding Proteins AT2G36910 31.034 4.12e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02541 - K05666 gmx:100808752 509.99