Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02540 ATGTCCCTTGCATTTTCAACTCTCCCATGTGCATTCCCTGTGAAACAAACCTCAGGGGACACGTTTATCTCAACCATGCTTCAATGGCTGAGATATATCTTCCTCACACCTTGTCCTCAAAGAGCTATAATGTCTTTCGTTGATGTTGTGCTCCTCTTGTTTCTCTTCGTGTTTACTGCCACCAAGCTCTGGAAAAAGTCCTCTTTCAATGGTGGTTCCTCCACCGACCTCAACAAACCATTAATCGGAAACAATAGATTCGTTTTCTTGACAACTATGCGGTTCAAGTTAACCATAACTGCAGTGGTTGTTTTGACTATACTCTACACGGTTGCTTCCGTTCTTGCGTTTAGCAGTTCCTCCATGGGGCTGTCGAAGCAAGTTGACGAGGTGTTTTGGTTAGTTCAGGCCATAACACATGTTGTACTTGCACTCTTTATCATCCATGAGAAAAGGTTGCAAACCGTTGCACACCCTCGATCGGTTCGAATTTACTGGATTGTAAATTTCTTTATCATTTCGTTGTTCACTGTTTCTGCGGTTATACGTTTGATGTCTGTGGACGTGGATGACACCAAAGGCTTCAGGGTGGACGACGTGGTCTCTTTCATTTCGTTCCCTCTATCGTTATTTCTTCTTTTTGTGGCCGTTGAAGGATCCACCGGCATGGTTTTGTCGACAGAAGAAACACGACCACTTGTTGAAGAAAAAACTAAGTTGCATGATGGTACTACTAGAAAATCCGAGGTTACTGGCTTTGCTTCAGCTTCTCTATTATCCAAGGCATTTTGGATTTGGATAAACCCCTTATTGAGTAAAGGGCACAAGTCCGTGCTGAAGATTGATGATATTCCGACGCTTTCTCCAGAGCACAGAGCTGAGAGAATGTCATCTATTTTTGAATCAAAATGGCCCCAATCAAAGGAGACACCAAAGCATCCTGTTGGAATGACTTTGCTTCGGTGCTTTTGGAAGGAGCTAGCCTTCACCGCCTTCCTTGCAATCATTAGGCTCTGTGTCATGTTCGTGGGGCCGGTTCTGATACAAAATTTTGTTGATTTCACATCAGGGAAGAGAAGCTCCGAATACGAAGGATACTACCTCGTGATGATTCTTCTTGTTGCTAAGTTCGTTGAAGTCATGAGTACTCATCACTTCAACTTCCAAGCTCAAAAGCTTGGGATGCTTCTACGGTGCACTCTTATCTCCTCTTTGTATAAAAAGGGGTTAAAGCTATCATGCTCTTCTCGGCAGGATCATGGAGTAGGGACAATTGTGAATTATATGGCTGTGGATACCCAGCAACTCTCTGACATGATGCTTCATTTACATGCTGTGTGGATGATGCCACTCCAAGTTGGTATTGGCTTGGTTCTGCTTTACAATTGTTTAGGTGCCTCAGTTGTCTCCGCGTTTCTTGGTCTGCTTTGTGTTTTTGTCTATTCTGTGGTGAGCAACCAAAGAAACAACAAGTTCCAACACAATGTGATGGTGAACCGGGACTCGCGAATGAAAGCTGTGAATGAGATGCTTAACTACATGCGTGTGATCAAGTTTCAGGCTTGGGAGGAACATTTCAAGCAGAGAATTATGGGTTTCCGTGAGACGGAGTATGGGTGGCTCTCCAAGTTGATGTTCTCAATTTTTGGCTCTATCGTTGTGATGTGGAGCACACCATTGTTGGTGTCAACTCTTACATTTGGAACGGCTATTTTGCTGGGAGTTCAACTTGATGCAGCCACTGTGTTCACGACAACAGCTGTGTTCAGGTTATTGCAGGAGCCTATTAGGACTTTCCCACAGTCTATGATATCTCTTTCACAAGCAATGATATCACTGGAGAGGTTAGATAGGTTCATGTTGAGCGGGGAATTGTCGAAGGATTCAGTTGAGAGAGAGGAAGGCTGTGGTGGACAAACGGCAGTTGAAATCATAGATGGGACTTTTAGTTGGGATGATGATAACATGCACGAGGACTTGAAAAATATCAATTTGAAGATAAAAAAGGGTGAGCTTACAGCAATTGTTGGGACTGTAGGGTCAGGAAAGTCATCCCTTCTTGCATCAATTCTTGGAGAGATGCGAAAGATTTCTGGAAAGGTTCGGGTTTGTGGGAGTGTTGCTTATGTTGCACAAACATCTTGGATTCAAAATGGGACCATTGAAGAAAACATTCTCTTTGGTTTACCGATGGACAGACAGAGGTACAATGAAGCTATCAGGGTGTGTTGTTTGGAGAAAGATTTGGACATGATGGATTATGGGGATCAGACAGAAATTGGAGAGCGTGGTATCAACCTGAGTGGAGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTGTATCAAGACTGTGATGTATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGCTCTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAAAAGCAAGACCACTATTCTTGTAACACACCAAGTAGATTTCCTACACAACGTGGATCGTATATTAGTGACGAAGGACGGTATGATAGTCCAATCAGGGAAATATGATGATATATTAGAGTCTGGAATGGATTTTAAAGCTCTGGTAGTTGCGCATGAGACCTCCATGGAATTAGTGGAGCAGGGTATGGTCATGCCCGGTGAAAATTTGAACAAACCAACGAAATCTCATGAGGCAACTTCAATTCACCAGGGAACCAATGATGAAAACAATTCTATTGACAAGCCTAAGTCTAGCAAGAAAAATTCTAAACTCATCAAAGAAGAGGAGAGAGCAACTGGCAAAGTGAGCTTACATATGTATAAACTCTATTGCACTGAGGCTTTTGGGTGGTGGGGTATTACAGTAGTATTGGTTATTTCTTTGTTGTGGCAAATGACTTTGATGGCAGGCGATTATTGGTTGGCATATGAAACCTCGGAAGAACGTGCTAAAATGTTTAATCCTTCTCTGTTCATGTACGTGTATGCAATTACTACTGTTGTTTCCATTATTTTGTTAGTGGCAAGATCCTACTTCTTTGCACTCCTGGGGCTAAGGACTGCACAACTATTCTTCACGCAAATTGTTCGTAGCATCTTGCATGCGCCCATGTCTTTCTTTGACACTACGCCATCGGGGAGAATTCTCAGTAGGGCATCCACTGATCAAACCAATGTGGATGTCCTTCTCCCCTTGTTCACGGGAGTTGTTATCGCCATGTACATTACAGTGCTCAGCATTTTCATCATAACCTGTCAAAATTCTTGGCCAACAGTGTTTTTAATAATTCCTCTTGCTTGGTTGAATATATGGTACCGGGATTACTATCTTGCATCATCTCGGGAATTTACTCGCCTGGATTCAATTACCAAAGCACCAGTTATTCATTACTTCTCTGAAAGTATTGCAGGGGTCATGACAATCCGTTCATTCAGAAAGCAAAAGATATTCTGCGATGAAAATCTCAAACGGGTGAATGCTAATCTGCGAATGGACTTCCACAACTACAGTTCTAATGAATGGTTGGGATTTCGCATAGAATTGTTTGGAAGCTTTGTCTTTTGCATTTCTGCGATGTTTATGATCATCTTACCCAGTAGTATTATAAAACCAGAAAATGTTGGTTTATCTCTCTCTTACGGGTTGTCCTTAAATGCTGTCTTGTTTTGGGCTGTATACATGAGTTGTTTCATCGAAAACAAGATGGTGTCTGTTGAGAGGATAAAGCAGTTTACAAATATTCCATCGGAACCAGCATGGAATATCAAGGATCATCTACCTCCTTCAAATTGGCCAAGTCAAGGAAATGTAGATATCAAAGAGTTGCAGGTCAGATATCGTCCAAACACTCCTCTGGTTCTGAAAGGAATTACTTTAAGCATTAGTGGAGGTGAAAAAGTTGGTGTTGTGGGTCGAACTGGTAGCGGAAAGTCAACTTTAATTCAAGTATTCTTTAGGCTGGTGGAACCTTCGGAAGGAAAAATAATAATTGATGGTGTTGACATATCCATCTTGGGACTTCACGATCTTAGATCACGGTTTGGTATCATTCCTCAAGAACCAGTGCTTTTTGAAGGAACTGTGAGAAGCAACATTGATCCAATTGGAGAATATACAGATGAAGAAATATGGAAGGGCTTGGAACGTTGTCAACTAAAAGATGTTGTTGCTGCCAAGCCTGAAAAACTAGACTCTTTAGTGGTGGATAATGGAGAGAACTGGAGTGTGGGACAGAGACAGTTACTTTGTCTAGGGAGGGTTATACTTAAGAAAAGCCGACTTTTGTTCATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATGGTGTGATTCAGAAGATCATAAGAGAGGAGTTTGCATTATGCACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTGACAGAGTTTTAGTTGTTGATGCAGGGCGAGCGAAAGAATATGACAAGCCTTCAAATTTGCTTAAGAAGCAATCTCTCTTCGGAGCATTAGTTCAAGAATATGTCAACCGCTCCAGTGGACTATGA 4524 0.4224 MSLAFSTLPCAFPVKQTSGDTFISTMLQWLRYIFLTPCPQRAIMSFVDVVLLLFLFVFTATKLWKKSSFNGGSSTDLNKPLIGNNRFVFLTTMRFKLTITAVVVLTILYTVASVLAFSSSSMGLSKQVDEVFWLVQAITHVVLALFIIHEKRLQTVAHPRSVRIYWIVNFFIISLFTVSAVIRLMSVDVDDTKGFRVDDVVSFISFPLSLFLLFVAVEGSTGMVLSTEETRPLVEEKTKLHDGTTRKSEVTGFASASLLSKAFWIWINPLLSKGHKSVLKIDDIPTLSPEHRAERMSSIFESKWPQSKETPKHPVGMTLLRCFWKELAFTAFLAIIRLCVMFVGPVLIQNFVDFTSGKRSSEYEGYYLVMILLVAKFVEVMSTHHFNFQAQKLGMLLRCTLISSLYKKGLKLSCSSRQDHGVGTIVNYMAVDTQQLSDMMLHLHAVWMMPLQVGIGLVLLYNCLGASVVSAFLGLLCVFVYSVVSNQRNNKFQHNVMVNRDSRMKAVNEMLNYMRVIKFQAWEEHFKQRIMGFRETEYGWLSKLMFSIFGSIVVMWSTPLLVSTLTFGTAILLGVQLDAATVFTTTAVFRLLQEPIRTFPQSMISLSQAMISLERLDRFMLSGELSKDSVEREEGCGGQTAVEIIDGTFSWDDDNMHEDLKNINLKIKKGELTAIVGTVGSGKSSLLASILGEMRKISGKVRVCGSVAYVAQTSWIQNGTIEENILFGLPMDRQRYNEAIRVCCLEKDLDMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDVYLLDDVFSAVDAHTGSEIFKECVRGALKSKTTILVTHQVDFLHNVDRILVTKDGMIVQSGKYDDILESGMDFKALVVAHETSMELVEQGMVMPGENLNKPTKSHEATSIHQGTNDENNSIDKPKSSKKNSKLIKEEERATGKVSLHMYKLYCTEAFGWWGITVVLVISLLWQMTLMAGDYWLAYETSEERAKMFNPSLFMYVYAITTVVSIILLVARSYFFALLGLRTAQLFFTQIVRSILHAPMSFFDTTPSGRILSRASTDQTNVDVLLPLFTGVVIAMYITVLSIFIITCQNSWPTVFLIIPLAWLNIWYRDYYLASSREFTRLDSITKAPVIHYFSESIAGVMTIRSFRKQKIFCDENLKRVNANLRMDFHNYSSNEWLGFRIELFGSFVFCISAMFMIILPSSIIKPENVGLSLSYGLSLNAVLFWAVYMSCFIENKMVSVERIKQFTNIPSEPAWNIKDHLPPSNWPSQGNVDIKELQVRYRPNTPLVLKGITLSISGGEKVGVVGRTGSGKSTLIQVFFRLVEPSEGKIIIDGVDISILGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGEYTDEEIWKGLERCQLKDVVAAKPEKLDSLVVDNGENWSVGQRQLLCLGRVILKKSRLLFMDEATASVDSQTDGVIQKIIREEFALCTIISIAHRIPTVMDCDRVLVVDAGRAKEYDKPSNLLKKQSLFGALVQEYVNRSSGL 1507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02540 1507 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Spst1g02540 1507 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524|GO:0016887
Spst1g02540 1507 Gene3D - 621 879 IPR027417 -
Spst1g02540 1507 Pfam ABC transporter transmembrane region 962 1201 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02540 1507 Pfam ABC transporter transmembrane region 329 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02540 1507 Gene3D ABC transporter type 1, transmembrane domain 910 1246 IPR036640 GO:0005524|GO:0016020
Spst1g02540 1507 Gene3D ABC transporter type 1, transmembrane domain 312 620 IPR036640 GO:0005524|GO:0016020
Spst1g02540 1507 CDD ABC_6TM_ABCC_D2 948 1240 IPR044726 GO:0140359
Spst1g02540 1507 FunFam ABC transporter C family member 10 311 624 - -
Spst1g02540 1507 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 865 IPR003439 GO:0005524
Spst1g02540 1507 MobiDBLite consensus disorder prediction 881 920 - -
Spst1g02540 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 862 IPR027417 -
Spst1g02540 1507 CDD ABCC_MRP_domain2 1263 1483 - -
Spst1g02540 1507 MobiDBLite consensus disorder prediction 887 906 - -
Spst1g02540 1507 Pfam ABC transporter 660 793 IPR003439 GO:0005524
Spst1g02540 1507 FunFam ABC transporter C family member 3 1248 1499 - -
Spst1g02540 1507 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 950 1228 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02540 1507 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 254 1499 - -
Spst1g02540 1507 Pfam ABC transporter 1282 1430 IPR003439 GO:0005524
Spst1g02540 1507 Gene3D - 1249 1499 IPR027417 -
Spst1g02540 1507 FunFam ABC transporter C family member 4 625 883 - -
Spst1g02540 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1258 1498 IPR027417 -
Spst1g02540 1507 SUPERFAMILY ABC transporter transmembrane region 936 1245 IPR036640 GO:0005524|GO:0016020
Spst1g02540 1507 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1267 1499 IPR003439 GO:0005524
Spst1g02540 1507 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 328 608 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02540 1507 SMART AAA_5 1291 1475 IPR003593 GO:0016887
Spst1g02540 1507 SMART AAA_5 669 847 IPR003593 GO:0016887
Spst1g02540 1507 FunFam ABC transporter C family member 5 911 1246 - -
Spst1g02540 1507 SUPERFAMILY ABC transporter transmembrane region 318 620 IPR036640 GO:0005524|GO:0016020
Spst1g02540 1507 CDD ABCC_MRP_domain1 642 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02540 Spst-Chr1 34018992 34025063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02540 598 858 Calmodulin-binding Proteins AT2G36910 29.348 1.58e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02540 - K05666 gmx:100808752 2492.61