Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02539 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCTAGGCCAAGAGAAGAAGCTTCCAGGCGTAGGATTCAAGAAGCTCAAGAAAATCTTGAAGAAGTGCAGGAAAAACTCTCCACCCCAGAAACCCCTTAATGCATCTCTTGCCACCAAAACCTGCCCCGACCATTGCCCAGTGTGCGATGGAACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGTTGTAGTCGGGTGTTTTAATCAGCGTGCACAGAAATTGTTGGAGCTACATCTTGCTTCTGGCTTCAGAAAGTACTTTTTTTGGATCAAAGGCAAATTGCGAGGGAAACATACTGCTCTGATTCAAGAAGGCAAAGATCTTGTCATTTATGCTCTCATAAATGCCATTGCAATCCGAAAAATACTGAAGAAATATGATAAGATTCATTATTCCAAGCAAGGACAATTATTCAAGTCGCAGGTTCAGAGTATGCACAAGGAGATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTCAAGTCGCGGAAGGCACATGCTTTGTTCGATGGATGTTCTCTCACAATTAAGGATGGGAAACCATCGCTTACTTGTGGGCTCTTTGATTCTATCAAAGTGGACATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCACATATTCTGCTATATTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTAACGGACTTAAGTCTGCAGACTCTAAAAGGAAGTGTCCTCTCTGCCGTAAGGGCGCAGTATATAAAGGTGCTGTGCACTTGGAAGAACTAAATATTTTGTTAGGCAGAAGCTGTCAGGAATACTGGGAGCAGAGGCTTCGGACAGAGAGAGTGGAGAGGATTAAGCAAATAAAGGAACACTGGAATTCACAGTGTAGGGCATTTGTGGGCGTCTAA 975 0.4318 MKFCKKYQEYMLGQEKKLPGVGFKKLKKILKKCRKNSPPQKPLNASLATKTCPDHCPVCDGTFFPSLLNEMSVVVGCFNQRAQKLLELHLASGFRKYFFWIKGKLRGKHTALIQEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAHALFDGCSLTIKDGKPSLTCGLFDSIKVDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVNGLKSADSKRKCPLCRKGAVYKGAVHLEELNILLGRSCQEYWEQRLRTERVERIKQIKEHWNSQCRAFVGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02539 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 IPR033326 -
Spst1g02539 324 CDD SPX_BAH1-like 2 147 - -
Spst1g02539 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Spst1g02539 324 SMART ring_2 220 268 IPR001841 -
Spst1g02539 324 SUPERFAMILY RING/U-box 213 272 - -
Spst1g02539 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 322 IPR013083 -
Spst1g02539 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Spst1g02539 324 CDD RING-HC_BAH1-like 210 283 - -
Spst1g02539 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Spst1g02539 324 Pfam Zinc finger, C3HC4 type (RING finger) 217 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02539 Spst-Chr1 34007934 34010620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02539 210 269 C3H Transcription Factor Family AT4G28270 41.791 9.70e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02539 K16275 - gmx:100787904 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02539 1 34007934 34010620 Spst1g02539 1 34007934 34010620 ECH
Spst7g00880 7 10523847 10532827 Spst1g02539 1 34007934 34010620 PCT