Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g02539 | ATGAAGTTCTGCAAAAAATACCAGGAATACATGCTAGGCCAAGAGAAGAAGCTTCCAGGCGTAGGATTCAAGAAGCTCAAGAAAATCTTGAAGAAGTGCAGGAAAAACTCTCCACCCCAGAAACCCCTTAATGCATCTCTTGCCACCAAAACCTGCCCCGACCATTGCCCAGTGTGCGATGGAACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGTTGTAGTCGGGTGTTTTAATCAGCGTGCACAGAAATTGTTGGAGCTACATCTTGCTTCTGGCTTCAGAAAGTACTTTTTTTGGATCAAAGGCAAATTGCGAGGGAAACATACTGCTCTGATTCAAGAAGGCAAAGATCTTGTCATTTATGCTCTCATAAATGCCATTGCAATCCGAAAAATACTGAAGAAATATGATAAGATTCATTATTCCAAGCAAGGACAATTATTCAAGTCGCAGGTTCAGAGTATGCACAAGGAGATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTCAAGTCGCGGAAGGCACATGCTTTGTTCGATGGATGTTCTCTCACAATTAAGGATGGGAAACCATCGCTTACTTGTGGGCTCTTTGATTCTATCAAAGTGGACATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCACATATTCTGCTATATTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTAACGGACTTAAGTCTGCAGACTCTAAAAGGAAGTGTCCTCTCTGCCGTAAGGGCGCAGTATATAAAGGTGCTGTGCACTTGGAAGAACTAAATATTTTGTTAGGCAGAAGCTGTCAGGAATACTGGGAGCAGAGGCTTCGGACAGAGAGAGTGGAGAGGATTAAGCAAATAAAGGAACACTGGAATTCACAGTGTAGGGCATTTGTGGGCGTCTAA | 975 | 0.4318 | MKFCKKYQEYMLGQEKKLPGVGFKKLKKILKKCRKNSPPQKPLNASLATKTCPDHCPVCDGTFFPSLLNEMSVVVGCFNQRAQKLLELHLASGFRKYFFWIKGKLRGKHTALIQEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAHALFDGCSLTIKDGKPSLTCGLFDSIKVDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVNGLKSADSKRKCPLCRKGAVYKGAVHLEELNILLGRSCQEYWEQRLRTERVERIKQIKEHWNSQCRAFVGV | 324 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g02539 | 324 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE BAH1 | 1 | 323 | IPR033326 | - | |
Spst1g02539 | 324 | CDD | SPX_BAH1-like | 2 | 147 | - | - | |
Spst1g02539 | 324 | ProSiteProfiles | SPX domain profile. | 1 | 151 | IPR004331 | - | |
Spst1g02539 | 324 | SMART | ring_2 | 220 | 268 | IPR001841 | - | |
Spst1g02539 | 324 | SUPERFAMILY | RING/U-box | 213 | 272 | - | - | |
Spst1g02539 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 210 | 322 | IPR013083 | - | |
Spst1g02539 | 324 | ProSiteProfiles | Zinc finger RING-type profile. | 220 | 269 | IPR001841 | - | |
Spst1g02539 | 324 | CDD | RING-HC_BAH1-like | 210 | 283 | - | - | |
Spst1g02539 | 324 | ProSitePatterns | Zinc finger RING-type signature. | 235 | 244 | IPR017907 | - | |
Spst1g02539 | 324 | Pfam | Zinc finger, C3HC4 type (RING finger) | 217 | 270 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g02539 | Spst-Chr1 | 34007934 | 34010620 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g02539 | 210 | 269 | C3H Transcription Factor Family | AT4G28270 | 41.791 | 9.70e-07 | 47.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g02539 | K16275 | - | gmx:100787904 | 619.002 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g02539 | 1 | 34007934 | 34010620 | Spst1g02539 | 1 | 34007934 | 34010620 | ECH | |
Spst7g00880 | 7 | 10523847 | 10532827 | Spst1g02539 | 1 | 34007934 | 34010620 | PCT |