Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02522 ATGACTATGGAGCCAGACATTGAATCCAAGTACGCTCATAACGGCAAGGTTATGGTCGGCACCGCCATTCTCCTCTTCGTTCTCATAATCCTCATTATTTTGTTCAACACCTACGTCCGCTTCTGCCGCCGTCGCCGCCTCGCTCTTTCTTCTCATTCGCTTCCGACAACTTCCTCCGCCGAGCCCTGCCTCGACCCTTCCGTCCTCAAGTCCCTCCCCACTTTCTCCTTCTCCGCCGCCGTCCACTGCTCGCTCCAGGACTGCGCTGTCTGCCTGTCGGAGTTCGCCGACGGCGACAAAGGCCGCGTGCTCCCCAACTGTAACCACGCTTTCCACGCCAACTGCATCGACACCTGGTTCGCCTCTCACTCCACTTGTCCTCTCTGCCGAACCCTGGTCCAACCGGTCGCGGCTTGCCCTGACGCTGAACCCGGTTCGGTTCCGGTTTCCGAAGCGGAGGAGGGTTGTTCTTCGTCTTTACCTCCCCCAATTGGGTGTCCGAGAAAGCCTTTGGGTATAATCATAGAGGTGGCAGAGGTGGAAAGAGGGTTGGATCCCGTAACCGGAGACGAAGGATTCAGATGCTCATTGAAGAGGTTTTGTAACGTTTAA 612 0.5654 MTMEPDIESKYAHNGKVMVGTAILLFVLIILIILFNTYVRFCRRRRLALSSHSLPTTSSAEPCLDPSVLKSLPTFSFSAAVHCSLQDCAVCLSEFADGDKGRVLPNCNHAFHANCIDTWFASHSTCPLCRTLVQPVAACPDAEPGSVPVSEAEEGCSSSLPPPIGCPRKPLGIIIEVAEVERGLDPVTGDEGFRCSLKRFCNV 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02522 203 Pfam Ring finger domain 87 130 IPR001841 -
Spst1g02522 203 SMART ring_2 88 129 IPR001841 -
Spst1g02522 203 SUPERFAMILY RING/U-box 68 136 - -
Spst1g02522 203 FunFam E3 ubiquitin-protein ligase ATL6 53 136 - -
Spst1g02522 203 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Spst1g02522 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 138 - -
Spst1g02522 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 136 IPR013083 -
Spst1g02522 203 CDD RING-H2_EL5-like 87 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02522 Spst-Chr1 33883830 33884441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02522 11 138 Rapid Response to Elicitors AT3G16720 42.466 3.40e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02522 - - pvu:PHAVU_001G208400g 354.369