Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02518 ATGAAAGTTTCCGCAGACACTATTCCAAATCCTACAACTCCTGTCTCCCCTGGAACCGCATGCAAATCTACCCCAGACCCGTCCTATTGCAAATCCGTTCTCCCTCCCCAAAACGGCAACGTTTACGACTATGGCCGGATCTCCGTGAAAAAGTCACTATCACAGGCTCGCAAGTTCTTGAGCCTTGTTGATAAATACCTCCAACGACGTTCTTCTCTTTCCGCCGCCGCAATCCGTGCACTTGAAGATTGTCGTACACTCGGGGAACTCAACTTCGATTTCCTTTCGAGTTCCTTCCAAACCGTGAACAAGACGACGAGGTTTCTCCCTAGTTTTCAAGCCGACGACATCCAAACCTTACTCAGCGCCATTCTGACCAACCAGCAAACATGCTTGGACGGTCTCAAAGACACTGCCTCTGCTTGGAGCGTGAGAAACGGTCTCACTGCCCCTCTTTCCAACGACACCAAACTCTACAGTGTCTCACTCGCTCTCTTCACCAAGGGTTGGGTTCCCAGAACCAAAGTCAACGCCATGCACCCTACCAAGAAACAACAAGGGTTCCATAACGGGCGTCTTCCGCTTAAGATGTCGAGCAGAACCCGTGCGATCTACGAGTCTGTGAGTAGGAGGAAGCTCCTTCAGGTCTCGGTCGCTGAGGAGGTTGTGGTGAGGGATATTGTGACGGTGAGCCAAGATGGAAGCGGCAACTTCACCACCATCAATGATGCCATTGCTGCAGCTCCTAATAAATCTGTCTCTACCGATGGATACTTCCTTATCTATGTCACTGCTGGTGTTTATGATGAAAATGTGTCCATTGATAAGAGGAAGACGTACCTGATGATGGTTGGGGATGGCATCAACAAGACAATTATCACTGGCAATCGCAGTGTCGTTGATGGCTGGACAACCTTCAGCTCCGCAACATTAGCTGTGGTAGGACAAGGATTCGTGGGAGTGAATATGACCATCCGCAACACCGCCGGAGCCGTGAAGCACCAAGCAGTGGCAGTTCGAAACGGAGCAGATTTGTCCACGTTTTACAGTTGCAGCTTCGAGGGGTACCAAGACACATTATACGTTCATTCCCTGAGACAATTCTACAGGGAATGCGACATCTACGGAACTGTAGATTTCATATTCGGAAACGCTAAGGTGGTGTTCCAAAGTTGCAACATGTATCCTCGTCTCCCCATGCAGGGTCAATTCAACGCCATCACTGCGCAAGGAAGAACCGATCCAAATCAAGACACTGGAATTTCTATCCACAACTGTACCATTAGAGCAGCTGATGATTTAGCTTCCAGCAACGGTGTTGCAACATATTTGGGAAGGCCATGGAAGGAGTATTCTAGAACAGTTTATATGCAAACTTCTATGGATGATTTGATCAACGGTGCAGGGTGGCGTGAATGGGACGGTGATTTTGCATTAAGCACTTTGTATTACGCAGAGTATAGCAACACTGGGCCAGGCTCCAACACCACCAATAGAGTGACGTGGCCTGGTTATCATCTGATTAATGCCACAGATGCAGCCAATTTTACAGTCTCCAATTTTTTGCTTGGTGATGATTGGTTACCTCAGACAGGAGTATCTTACACCAATAACTTGATATAG 1623 0.4818 MKVSADTIPNPTTPVSPGTACKSTPDPSYCKSVLPPQNGNVYDYGRISVKKSLSQARKFLSLVDKYLQRRSSLSAAAIRALEDCRTLGELNFDFLSSSFQTVNKTTRFLPSFQADDIQTLLSAILTNQQTCLDGLKDTASAWSVRNGLTAPLSNDTKLYSVSLALFTKGWVPRTKVNAMHPTKKQQGFHNGRLPLKMSSRTRAIYESVSRRKLLQVSVAEEVVVRDIVTVSQDGSGNFTTINDAIAAAPNKSVSTDGYFLIYVTAGVYDENVSIDKRKTYLMMVGDGINKTIITGNRSVVDGWTTFSSATLAVVGQGFVGVNMTIRNTAGAVKHQAVAVRNGADLSTFYSCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAKVVFQSCNMYPRLPMQGQFNAITAQGRTDPNQDTGISIHNCTIRAADDLASSNGVATYLGRPWKEYSRTVYMQTSMDDLINGAGWREWDGDFALSTLYYAEYSNTGPGSNTTNRVTWPGYHLINATDAANFTVSNFLLGDDWLPQTGVSYTNNLI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02518 540 SMART PMEI_2 12 165 IPR006501 GO:0004857
Spst1g02518 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 168 IPR035513 -
Spst1g02518 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 19 168 IPR035513 -
Spst1g02518 540 PANTHER PECTINESTERASE 19 529 - -
Spst1g02518 540 Pfam Pectinesterase 228 525 IPR000070 GO:0030599|GO:0042545
Spst1g02518 540 MobiDBLite consensus disorder prediction 1 21 - -
Spst1g02518 540 FunFam Pectinesterase 18 168 - -
Spst1g02518 540 Gene3D - 222 539 IPR012334 -
Spst1g02518 540 Pfam Plant invertase/pectin methylesterase inhibitor 19 165 IPR006501 GO:0004857
Spst1g02518 540 CDD PMEI-like_3 19 170 - -
Spst1g02518 540 FunFam Pectinesterase 221 539 - -
Spst1g02518 540 SUPERFAMILY Pectin lyase-like 224 536 IPR011050 -
Spst1g02518 540 NCBIfam pectinesterase inhibitor domain 19 167 IPR006501 GO:0004857
Spst1g02518 540 ProSitePatterns Pectinesterase signature 2. 374 383 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02518 Spst-Chr1 33856343 33858414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02518 16 540 Carbohydrate Esterase AT4G02330 65.378 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02518 K01051 - gmx:100800971 1020.38