Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02517 ATGGGTATGGCTTTTAACAGCTTGTATGTTTGCACACTCTGTGTTTCCCTTGTGCTATGCTTCTTCACGTCGATTTCCATAGCTGATAATAGCCATGCAGTCGTTCCACCAGAAACCATATGCTACTCAACCTTGGACCCTTCTTACTGCAAATTTGTTCTTGCCAATCAAAATGGTAGCATATATGACTATTGCCACATTTCTGTTCGAAAATCCCTGTCCCAGTCGCGTAAGTTATTGAACGTGGTGTACTCATATCTTCAAAATCCCTCTTCTTTCTCCCAACCCACCATCCGAGCCCTTGAAGATTGCCAATTACTTTCTGAACTGAACTTTGACTACTTATCAACAACCCATGACACTGTCGATAAAGCTAGCGATGTTCTTCCCACCTCTCAAACAGACGATGTTCACACATTGCTTAGTGCTGTTTTGACAAATCAGCAAACTTGTTTAGATGGACTTCAAACCTCAGTTTCAGATACAAGAGTGAAGAATGGTCTTTCTTCCCAACTCTCGGATGATATGAAGCTTAATAGTGTCTCGCTTTATTTGTTCACCAAGGCTTGGGTTCCTGAGAACAAAATATGGCAGCACCATGGAGCAGCCATCCAGAATGATGGATTACCCTTGAAGATGCCAAACAAAGTTCGTGCCATTTATGATTCTGCTAAAGGTCAGGGGAGGAAACTACTTCAAACATCGGATGACAGTGAAAGCGTGGTTGTGAGTGATATTGTGGTGGTTAGTAAAAATGGAAGTGGAAACTTTACCACCATAAACGATGCCATAGCTGCTGCACCAAATAACACAGCTGTTACGGATGGCTACTTCATTATTTTTATCACCGAGGGTGTATATCAAGAGTATCTATCGATAGCGAAAAACAAGAAGTTCTTGATGTTAATTGGAGACGGAATCAATCGGACAATTATCTCTGGTGATCACAACGTTGTTGATAGCTTTACAACATTCAACTCAGCAACATTTGCTGTGGTAGGAGAAGGATTCGTTGCAATGAACATAACATTCCGCAACACTGCTGGGCCAAGCAAGCACCAAGCAGTTGCAGTAAGAAATGGAGCAGATATGTCCACCTTCTATAGCTGTAGTTTTGAAGGGTACCAAGACACTTTATACACTCATTCTCTGAGGCAGTTTTATCGCGAATGTGACATATATGGCACAGTTGACTTCATATTTGGAAACGCAGCTGCTGTTTTTCAAAACTGCAACATGTATCCCCGCCTTCCCATGAGTGGACAGTTCAACGCCATCACTGCACAAGGTCGAACTGATCCAAATCAAAACACTGGCTTTTCCATACAAAATGCCACCATAAAAGCAGCACAGGATTTTGCTCCAATGGTTGGTAATGCGGAAACATACCTTGGAAGGCCATGGAAGGAGTACTCAAGAACTGTTTATATGCAGTCTTTCATGGATAGTTTGATAGCTCCTGCTGGTTGGCATGAATGGAATGGGAATTTCGCACTCAGCACATTGTATTACGCAGAATATGATAACATGGGTCCCGGTTCAAACACTGGCAAACGAGTGAACTGGTCTGGGTATCATGTTATCGATGCCACTGATGCAGCAAATTTTACTGTGTCTAACTTCTTGGATGGGGATGATTGGGTGCCTCAAACTAGCATTCCGTACCAGGCATCTTTAAATATTAACATTGAGCATGTGCTGAACTTCGCTGATAGTGGCGGGTTCTATCGCGATGAGATGAATGGGAAATCCCGTCGTTACATTTTCCAAGATGCGTGTCATGTAATTCGATGCTTATTGACAAAGTCTACATTGGTTGACTAA 1824 0.4243 MGMAFNSLYVCTLCVSLVLCFFTSISIADNSHAVVPPETICYSTLDPSYCKFVLANQNGSIYDYCHISVRKSLSQSRKLLNVVYSYLQNPSSFSQPTIRALEDCQLLSELNFDYLSTTHDTVDKASDVLPTSQTDDVHTLLSAVLTNQQTCLDGLQTSVSDTRVKNGLSSQLSDDMKLNSVSLYLFTKAWVPENKIWQHHGAAIQNDGLPLKMPNKVRAIYDSAKGQGRKLLQTSDDSESVVVSDIVVVSKNGSGNFTTINDAIAAAPNNTAVTDGYFIIFITEGVYQEYLSIAKNKKFLMLIGDGINRTIISGDHNVVDSFTTFNSATFAVVGEGFVAMNITFRNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNMYPRLPMSGQFNAITAQGRTDPNQNTGFSIQNATIKAAQDFAPMVGNAETYLGRPWKEYSRTVYMQSFMDSLIAPAGWHEWNGNFALSTLYYAEYDNMGPGSNTGKRVNWSGYHVIDATDAANFTVSNFLDGDDWVPQTSIPYQASLNINIEHVLNFADSGGFYRDEMNGKSRRYIFQDACHVIRCLLTKSTLVD 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02517 607 CDD PMEI-like_3 39 190 - -
Spst1g02517 607 SMART PMEI_2 32 185 IPR006501 GO:0004857
Spst1g02517 607 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 188 IPR035513 -
Spst1g02517 607 Pfam Pectinesterase 247 545 IPR000070 GO:0030599|GO:0042545
Spst1g02517 607 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Spst1g02517 607 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 188 IPR035513 -
Spst1g02517 607 SUPERFAMILY Pectin lyase-like 242 556 IPR011050 -
Spst1g02517 607 FunFam Pectinesterase 240 559 - -
Spst1g02517 607 Gene3D - 241 559 IPR012334 -
Spst1g02517 607 Pfam Plant invertase/pectin methylesterase inhibitor 38 181 IPR006501 GO:0004857
Spst1g02517 607 PANTHER PECTINESTERASE 23 551 - -
Spst1g02517 607 FunFam Pectinesterase 38 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02517 Spst-Chr1 33851822 33856039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02517 8 559 Carbohydrate Esterase AT4G02330 56.119 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02517 K01051 - gmx:100792847 962.6