Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02516 ATGGCTTTTAAGAACTTGTCCCTTCTTAAGCTCTGTGTTTCCCTTGTGTTATCCTTCTTGTCACCGATTTCCATGGCTTCTAATAATAAACATGATGTCGTTCCACCAGAGACCATTTGCCAATCCACTTTAGACCCTTCCTACTGCAAAACTGTGCTTGCCAATCAAAATGGCACCATCTTTGACTATGGTCGAATTTCTGTCCGAATGTCCTTGTCCCAGTCTCGCAAATTCTCAAACTTAGTAAACTCATATCTCCAAGACAGATCCTCTTTGTCTCTACCCACAATTCGCGCCCTTGAAGATTGTCAATTCCTCGCGGAACAAAACTTCGAATACTTATCGAACGCCCTCGATACTGTTGATAAAGCTAGCGATGATCTTCCTGCCGCTCAATCTGACGACCAGCAAACCATGCTTAGTGCTGTTTTGACAAACGAAGAAACTTGTTTAGAAGGCTTACAGACCACAGCCTCTGATCAAAGAGTGAAAAGTGATCTTTTCTCATCACTCTCCGATGACAAGAAGCTTCACAGTGTTTCCCTTGACTTGTTCACCAAAGGTTGGGTGCCTCAGAAGAATATCTCAACATCATGGCAACCAAATGGGAGGCACTTGGATTTCCGCAACGGTCGTTTACCATTGCAGATGTCTAACCGTGTACGTGCCATATATGATTCTGCTAGAGGTCACGGCAGAAAACTACTTCAAGCTACAAGCGATAGTGTATTGGTCAATGATATTGTGGTTGTTAGTCAGGATGGAAGCGGGAACTTCACTACCATCAACAATGCTATAGCAGCTGCGCCAAATAACACAGCTGCTAGTGATGGTTACTTTTTAATTTTTATCAAGGAAGGTGTGTATCAAGAGTATATATCCATAGCCAAAAACAAAAGGTACTTGATGATGGTTGGAGCTGGGATCAATCGAACGATTATCACCGGTGATCACAATGTTGTCGATAACTTCACAACATTCAACTCCGCGACATTTGCTGTGGTAGCACAAGGGTTCGTAGCTGTGAACATGACATTCCAAAACACTGCTGGGCCAAGCAAGAACCAAGCAGTGGCAGTGAGAAACGGAGCTGATATGTCCACTTTTTACAGCTGCAGCTTTGAGGGGTATCAAGACACCTTGTACACGCATTCTCTTCGACAGTTTTACCGTGAATGTGACATCTATGGTACCGTCGATTTCATATTTGGAAATGCTGCTGTTGTTTTCCAAACATGTAACATGTATCCCCGCCTTCCCTTGAGTGGACAATTCAATGCCATCACCGCACAAGGAAGAACAGATCCAAATCAAAATACAGGCACTTCCATTCAGAACGCAACTATAAAAGCTGCTGATGATTTGGCTCCTGTGGTTGGCACCGTGCAAACATATCTTGGGAGACCATGGAAAGAGTACTCAAGGACGGTATATATGCAGTCTTTCATGGATAGTTTGATAAATCCTGCTGGCTGGCATGAATGGAGTGGAACTTTTGCCCTAAGCACCTTGTTCTATGCAGAGTACAATAACACAGGACCTGGTTCAAGCACCGTAAACCGAGTAACATGGCCTGGTTATCAGGTTATCAATGCTACTGTTGCGGCAAACTTTACCGTATCTAACTTCTTGAGCGGGGATAATTGGCTTGTTCAAACTGGGGTTCCATTTTCCAGTGGATTGATATAG 1689 0.4369 MAFKNLSLLKLCVSLVLSFLSPISMASNNKHDVVPPETICQSTLDPSYCKTVLANQNGTIFDYGRISVRMSLSQSRKFSNLVNSYLQDRSSLSLPTIRALEDCQFLAEQNFEYLSNALDTVDKASDDLPAAQSDDQQTMLSAVLTNEETCLEGLQTTASDQRVKSDLFSSLSDDKKLHSVSLDLFTKGWVPQKNISTSWQPNGRHLDFRNGRLPLQMSNRVRAIYDSARGHGRKLLQATSDSVLVNDIVVVSQDGSGNFTTINNAIAAAPNNTAASDGYFLIFIKEGVYQEYISIAKNKRYLMMVGAGINRTIITGDHNVVDNFTTFNSATFAVVAQGFVAVNMTFQNTAGPSKNQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQTCNMYPRLPLSGQFNAITAQGRTDPNQNTGTSIQNATIKAADDLAPVVGTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGTFALSTLFYAEYNNTGPGSSTVNRVTWPGYQVINATVAANFTVSNFLSGDNWLVQTGVPFSSGLI 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02516 562 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
Spst1g02516 562 ProSitePatterns Pectinesterase signature 1. 276 295 IPR018040 -
Spst1g02516 562 SUPERFAMILY Pectin lyase-like 246 560 IPR011050 -
Spst1g02516 562 PANTHER PECTINESTERASE 25 551 - -
Spst1g02516 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 187 IPR035513 -
Spst1g02516 562 SMART PMEI_2 31 184 IPR006501 GO:0004857
Spst1g02516 562 Pfam Pectinesterase 249 547 IPR000070 GO:0030599|GO:0042545
Spst1g02516 562 FunFam Pectinesterase 242 561 - -
Spst1g02516 562 CDD PMEI-like_3 38 189 - -
Spst1g02516 562 FunFam Pectinesterase 37 187 - -
Spst1g02516 562 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Spst1g02516 562 Gene3D - 243 561 IPR012334 -
Spst1g02516 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02516 Spst-Chr1 33841824 33843706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02516 38 562 Carbohydrate Esterase AT1G02810 60.436 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02516 K01051 - gmx:100786124 940.643