Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02510 ATGTGCGGCGGAGAAATGATCGCGGAGTTCATCCAAAGCCACCGTGCCGGCACCCTCACACCCTCCCAACTGTGGCCCAAAACATTAGCCAACCACGACCAACACCAACGTTCTCACCCTCGGCAGCATCAACAACCAGAGTCATCCCAAGCTCCCCCAGCGAAGAGGCAGAGGAAAAACTTGTACAGAGGGATAAGGCAGCGGCCCTGGGGCAAATGGGCCGCGGAGATTCGCGACCCAAGTAAAGGGGCCCGTGTGTGGCTCGGCACCTTCAACACCGCCGAAGAAGCTGCGAGGGCCTACGACAAAGAAGCCCGGAAAATCCGAGGGAAAAAGGCCAAAGTCAATTTCCCACACGAGGACTATCCTCTACGCAAGACCCTCGACATGGACTTGTGTTACGATCGCAACCAAACAGAGCCTTTCCCTTCTCAGCCTTACCCCGCAGCGCCAAACGAAGAGGTAAATAACAACGTGGAGAAGCATTCGGAGGAGCTTATGACTTACGAGAACTTCATGAGGTTTTATCAGATTCCTTTCTATGACGCCCAATCAGCACCTCCATCTACTGCGCAGGAAAACGTGGATTTGGGTTTCAAAGACGCCTGTGGGCGCCTCCGGCTATTCTCACTTCTCAAATTTACCCGCGGCATACCGGCAGGCACAGCTTCACCAACAGTTGCAGCAGAAATGGTTTCGCTGAAACTGCAGAAGCGCCTCGCCGCAAGCGTTCTCAAGTGCGGCAGAGGAAAGGTTTGGCTTGATCCCAATGAAGTTAACGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGCTGGTTAAGGATGGGTTTATTATCAGGAAGCCCACCAAGATTCACTCTCGCTCACGTGCCCGTCGAATGAAGGAAGCCAAGAGGAAAGGACGTCACTCTGGATATGGTAAGCGTAAAGGTACAAGGGAGGCAAGGCTTCCTACTAAAATCCTTTGGATGAGGAGAATGCGTGTGCTCAGACGCTTGCTTCGCAAGTACAGGGAGTCTAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGGGTTTTGATGGAGAGCATACACAAGTCCAAAGCTGAGAAGGCAAGAGAGAAGACCTTATCTGATCAGTTCGAGGCCAAACGTGCCAAGAACAAGGCCAGCAGAGAAAGAAAAATTGCCCGGAGGGAGGAGCGATTGGCACAAGGTCCAGGAGAAAAGTCAGCAGCTGCACCCAGTGCTCCAGCTGCTACCGCGTCACAGCCTGCCCAAGCACCAAAGAAATCCAAGAAGTAA 1329 0.5184 MCGGEMIAEFIQSHRAGTLTPSQLWPKTLANHDQHQRSHPRQHQQPESSQAPPAKRQRKNLYRGIRQRPWGKWAAEIRDPSKGARVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPHEDYPLRKTLDMDLCYDRNQTEPFPSQPYPAAPNEEVNNNVEKHSEELMTYENFMRFYQIPFYDAQSAPPSTAQENVDLGFKDACGRLRLFSLLKFTRGIPAGTASPTVAAEMVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKSAAAPSAPAATASQPAQAPKKSKK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02510 442 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Spst1g02510 442 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Spst1g02510 442 MobiDBLite consensus disorder prediction 287 309 - -
Spst1g02510 442 Pfam AP2 domain 62 110 IPR001471 GO:0003700|GO:0006355
Spst1g02510 442 Coils Coil 152 172 - -
Spst1g02510 442 MobiDBLite consensus disorder prediction 425 442 - -
Spst1g02510 442 Hamap 50S ribosomal protein L19e [rpl19e]. 233 379 IPR000196 GO:0003735|GO:0005840|GO:0006412
Spst1g02510 442 SUPERFAMILY Ribosomal protein L19 (L19e) 233 374 IPR035970 GO:0003735|GO:0005840|GO:0006412
Spst1g02510 442 Gene3D - 287 420 - -
Spst1g02510 442 MobiDBLite consensus disorder prediction 374 442 - -
Spst1g02510 442 CDD AP2 62 119 IPR001471 GO:0003700|GO:0006355
Spst1g02510 442 SMART Ribosomal_L19e_2 233 376 IPR000196 GO:0003735|GO:0005840|GO:0006412
Spst1g02510 442 ProSitePatterns Ribosomal protein L19e signature. 237 256 IPR023638 -
Spst1g02510 442 MobiDBLite consensus disorder prediction 374 414 - -
Spst1g02510 442 CDD Ribosomal_L19e_E 234 397 IPR033935 GO:0003735|GO:0022625
Spst1g02510 442 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Spst1g02510 442 MobiDBLite consensus disorder prediction 31 65 - -
Spst1g02510 442 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Spst1g02510 442 FunFam Ethylene-responsive transcription factor 2 60 119 - -
Spst1g02510 442 FunFam Ribosomal protein L19 287 423 - -
Spst1g02510 442 MobiDBLite consensus disorder prediction 287 315 - -
Spst1g02510 442 PANTHER 60S RIBOSOMAL PROTEIN L19 231 418 IPR039547 GO:0003723|GO:0003735|GO:0022625
Spst1g02510 442 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Spst1g02510 442 Pfam Ribosomal protein L19e 234 375 IPR000196 GO:0003735|GO:0005840|GO:0006412
Spst1g02510 442 Gene3D - 232 286 IPR015972 GO:0003735|GO:0005840|GO:0006412
Spst1g02510 442 FunFam Ribosomal protein L19 231 286 - -
Spst1g02510 442 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02510 Spst-Chr1 33772929 33777597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02510 231 442 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.434 1.34e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst1g02510 Ribosomal_L19e 7.7e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02510 K02885 - gmx:100527501 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02510 1 33772929 33777597 Spst1g02510 1 33772929 33777597 ECH