Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02505 ATGACAAAAAGGACACCTTGTGAAGAGTTTGAAGTTTGCTTTGGTGAGGATAATGTTTACCGGGACAAGTATCGATCCATTGATCCATCGAGCGAGTGCGACTTGTCTCTCCCTTGCGCCCCAACTCTCAGGCCATGCGACCACCCTGTTCCTCCGCCAGCGCCCTCTCCAGAGAGGATTTCTTTTTCATCATCGCCGCTTTCTCTCTCTGTTTTTCCACCCATGTCTGCCGACGCCCACGCCGCTAATTATATAAATCCCAAGGGACTCCTCTGCAATGCCGCCGCCGGTGCTTCCGCGGGGGTTATTGCTGCTACATTTGTGTGTCCTTTAGATGTCATCAAAACTAGGTTTCAGGTTCATGGTGTCCCGCAGCTCGCCAATGGAAGTGTTAAAGGCAGCATAATAGTTGCTAGTTTGGAGCAAATTTTTCGCAAGGAGGGGTTACGTGGCATGTACCGAGGGCTTGCGCCCACTGTGCTGGCTTTACTTCCAAATTGGGCGGTTTATTTTAGTGTATACGAGCAGTTTAAGAGCCTTCTTCATTCTGATGATGAAAGCCATCATCTTTCGATTGGATCTAATATGATAGCTGCTTCTGGTGCTGGAGCTGCAACTACCATGTTCACAAATCCCTTATGGGTTGTCAAGACTAGACTCCAAACTCAAGGAATGAGATCTGGTGTTGTGCCATATAGGGGCACACTATCTGCATTGAGGAGAATTGCCCATGAGGAGGGCATTCGGGGTCTGTACAGTGGCCTTGTTCCTGCTTTGGCCGGTGTCAGTCATGTTGCCATCCAATTTCCGACATACGAAACAATAAAATTTTATCTGGCAAATCAAGATGACGCAGCAATGGATAAACTTGGTGCACGTGATGTTGCGATTGCATCATCAGTTTCCAAAATTTTTGCATCCACATTGACTTATCCTCATGAGGTCGTACGGTCCAGACTGCAAGAACAAGGGCATCATTCAGAGAAACGGTACTCTGGTGTGATTGACTGTATTAGAAAGGTTTTTCAACAAGAAGGCATATCGGGTTTTTACAGAGGTTGTGCCACCAACCTTCTGAGGACAACGCCAGCTGCTGTAATCACATTCACCAGCTTTGAAATGATTCACCGATTCCTTGTTTCTCTTTTTCCATCTGATTCACAGCCTCATATTTTGTGA 1179 0.4673 MTKRTPCEEFEVCFGEDNVYRDKYRSIDPSSECDLSLPCAPTLRPCDHPVPPPAPSPERISFSSSPLSLSVFPPMSADAHAANYINPKGLLCNAAAGASAGVIAATFVCPLDVIKTRFQVHGVPQLANGSVKGSIIVASLEQIFRKEGLRGMYRGLAPTVLALLPNWAVYFSVYEQFKSLLHSDDESHHLSIGSNMIAASGAGAATTMFTNPLWVVKTRLQTQGMRSGVVPYRGTLSALRRIAHEEGIRGLYSGLVPALAGVSHVAIQFPTYETIKFYLANQDDAAMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVIDCIRKVFQQEGISGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSLFPSDSQPHIL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02505 392 FunFam Mitochondrial nicotinamide adenine dinucleotide transporter 1 187 382 - -
Spst1g02505 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 190 278 IPR018108 -
Spst1g02505 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 290 378 IPR018108 -
Spst1g02505 392 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 91 383 IPR044712 GO:0006862|GO:0055085
Spst1g02505 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 88 180 IPR018108 -
Spst1g02505 392 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 76 186 - -
Spst1g02505 392 Gene3D Mitochondrial carrier domain 185 382 IPR023395 -
Spst1g02505 392 Gene3D Mitochondrial carrier domain 62 184 IPR023395 -
Spst1g02505 392 PRINTS Mitochondrial carrier protein signature 93 106 IPR002067 GO:0055085
Spst1g02505 392 PRINTS Mitochondrial carrier protein signature 106 120 IPR002067 GO:0055085
Spst1g02505 392 PRINTS Mitochondrial carrier protein signature 155 175 IPR002067 GO:0055085
Spst1g02505 392 PRINTS Mitochondrial carrier protein signature 205 223 IPR002067 GO:0055085
Spst1g02505 392 PRINTS Mitochondrial carrier protein signature 299 321 IPR002067 GO:0055085
Spst1g02505 392 Pfam Mitochondrial carrier protein 296 380 IPR018108 -
Spst1g02505 392 Pfam Mitochondrial carrier protein 190 281 IPR018108 -
Spst1g02505 392 Pfam Mitochondrial carrier protein 89 183 IPR018108 -
Spst1g02505 392 SUPERFAMILY Mitochondrial carrier 89 374 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02505 Spst-Chr1 33722283 33728543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02505 75 392 Chloroplast and Mitochondria Gene Families AT2G47490 74.528 9.84e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02505 K15115 - gmx:100500213 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02505 1 33722283 33728543 Spst1g02505 1 33722283 33728543 ECH