Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02503 ATGTTGTCCAGGGAAACCAGAGAGATAGTAGTTGATTTGGTATCGGATTCAATGGCGACGAGAAATCGAACTGTAGAGTTTAGGAAGCACAGAGACGCCGTTAAGAGCGTGCGCGCTCCTCTCTCCTCCTCCGCATCTGCTTCTTCCACCGGTCCCGTCATCGAAATGGTTACCACTTCGCTTCTTCCTTCCAATCGATCATCCTATGCTCCTTTAAGCACCGAGGACCCGTCCACCTCTAGGGATGCGTTTACTGTGGGGTTGCCACCGTCTTGGGTGGATGATTCTGAAGAAATAGCTACAACTATACAACGTGCTCGGATTAAAATTTCTGAGTTAACCAAAGCTCATGCGAAGGCTTTGATGCCTTCCTTTGGGGATGGCAATGAGGATCAGCGTCTTATTGAGAATCTGACCCAGGAAATTACATCTCTTCTTAGAAAGTCTGAAATGAGGCTAAAAAGACTTTCTGCTGCTAGCGGATCTTCTGAGGATTCTAATGTTAGAAAAAATGTACAGCGTGCCCTTGCTACAGACCTTCAGAACCTATCAATGGATCTTCGGCGAAAACAATCAGCATATTTGAAACGTTTGCAGCAGCAAAAAGAGGGTTATGATGGGGTTGACTTGGAGATGAACTTTAACGGGAGTAAATTTGGATCAAATAATGATGAATTCAGTGATGTGGGTTTTAGTGAAGAGCAAATGACAAAGCTAAAGAAAAGTGAGCAGTTCTCAGAGGAAAGGGAAAGAGAGATTGAACAGGTTGTTAAATCAGTACATGAACTTGCGCAAATCATGAAGGATCTCTCTGTCCTTGTGATAGATCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTTCTACGTCCGTTGAAGAGGGCCTTAAGGAGTTGCAAAAGGCTGAGAGAACGCAGAAAAAAGGAGGGATGATTATGTGTGCAACATCGCTTATTATAATGTGTATGGGATTTGTTCTTAAAATGCCTTGGGCTTACATTATTGGCTCCTCAGTGAACAAGATGGGGATGGCATTGTACAGCATCTCTTCGTGTAAAGATAGATATTAG 1080 0.4333 MLSRETREIVVDLVSDSMATRNRTVEFRKHRDAVKSVRAPLSSSASASSTGPVIEMVTTSLLPSNRSSYAPLSTEDPSTSRDAFTVGLPPSWVDDSEEIATTIQRARIKISELTKAHAKALMPSFGDGNEDQRLIENLTQEITSLLRKSEMRLKRLSAASGSSEDSNVRKNVQRALATDLQNLSMDLRRKQSAYLKRLQQQKEGYDGVDLEMNFNGSKFGSNNDEFSDVGFSEEQMTKLKKSEQFSEEREREIEQVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKELQKAERTQKKGGMIMCATSLIIMCMGFVLKMPWAYIIGSSVNKMGMALYSISSCKDRY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02503 359 ProSitePatterns Syntaxin / epimorphin family signature. 249 288 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst1g02503 359 SMART tSNARE_6 238 305 IPR000727 -
Spst1g02503 359 FunFam Syntaxin-43 89 297 - -
Spst1g02503 359 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 243 305 IPR000727 -
Spst1g02503 359 SMART SynN_4 83 199 IPR006011 GO:0016020
Spst1g02503 359 PANTHER SYNTAXIN 94 325 IPR045242 -
Spst1g02503 359 Pfam SNARE domain 279 329 IPR000727 -
Spst1g02503 359 Gene3D - 89 297 - -
Spst1g02503 359 SUPERFAMILY t-snare proteins 88 298 IPR010989 GO:0016020|GO:0016192
Spst1g02503 359 CDD SNARE_syntaxin16 247 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02503 Spst-Chr1 33709170 33713692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02503 18 326 SNARE and Associated Proteins AT3G05710 67.702 2.29e-153 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02503 K08489 - gmx:100803629 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02503 1 33709170 33713692 Spst1g02503 1 33709170 33713692 ECH
Spst1g02503 1 33709170 33713692 Spst10g00010 10 132070 136105 ECH