Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02495 ATGTCTAATAATCAGAACAGTAAGAGTTCGGCACCCAAACTGTTTGGTTTCCCACTAACAGAGCAAGAGGAGGAATTTGCAGAAAGAAAATTTGGAGAGGACAGAAAATTCAGGTGCCACTACTGCAAGCGAGTTTTCGCAAACTCACAGGCTTTAGGGGGCCACCAAAACGCTCACAAGAAAGAGCGTCAGAGAGCAAGGCGATTCCAAATCCACAACCACAGACGCTCCTCCATGCCACCATCCTCTGTTGCAGTTACTCCTCTTACGTTTCTCACTTCCCATGCAATAATAAGATCAGTGCCACTTTCACTTACACTGCCCTCCGTTTACCTTCCACCTCCATCTTCTTCTACTTCTACTTCTGCTTCTGCTTCTTCCACCGCAAAGCACTTCCCGTCACGCCCCGTTTTCATTCCTTCCTCCACCCACCGTACTACATCTTTTCCTTTTCAACTTTATGCCTCGCCCACTATACTGCAATCTGCTTCTACTGTCCTTGATTTTTCTGCAGATAGGGAAGTGGATGTCCACCTCAAATTGTAA 546 0.4652 MSNNQNSKSSAPKLFGFPLTEQEEEFAERKFGEDRKFRCHYCKRVFANSQALGGHQNAHKKERQRARRFQIHNHRRSSMPPSSVAVTPLTFLTSHAIIRSVPLSLTLPSVYLPPPSSSTSTSASASSTAKHFPSRPVFIPSSTHRTTSFPFQLYASPTILQSASTVLDFSADREVDVHLKL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02495 181 MobiDBLite consensus disorder prediction 116 131 - -
Spst1g02495 181 FunFam Zinc finger protein 6 25 98 - -
Spst1g02495 181 MobiDBLite consensus disorder prediction 116 137 - -
Spst1g02495 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Spst1g02495 181 PANTHER ZINC FINGER PROTEIN 5 4 181 IPR044299 GO:0010090
Spst1g02495 181 SUPERFAMILY beta-beta-alpha zinc fingers 34 64 IPR036236 -
Spst1g02495 181 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Spst1g02495 181 Gene3D Classic Zinc Finger 21 85 - -
Spst1g02495 181 Pfam C2H2-type zinc finger 37 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02495 Spst-Chr1 33642892 33643437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02495 7 71 C2H2 Transcription Factor Family AT1G67030 50.685 3.32e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g02495 zf-C2H2_6 2.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02495 - - gmx:100806818 201.06