Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02492 ATGAAAGTGATTCCGCCAAGACTTGACTACGAGTATGGAGTCGAAGATACGCCTTGGCTTTGCAACGTGTTCCTTTCCAAACTGACCAATCACGTTGCTGACCTCGGATATATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGGAGGTGGACAACCCAGGAGGATGAAATTTTGACCAAGTACATTCAGGCCAATGGAGAAGGTTCTTGGAGGTCGTTGCCAAAAAATGCAGGATTGTTAAGATGTGGGAAGAGTTGCAGGTTAAGGTGGATTAACTATTTGAGAGCTGATCTAAAGAGAGGGAACATTTCTGTTGAGGAAGAAAACACCATTGTGAAGTTGCATGCTTCCTTGGGCAACAGGTGGTCGTTGATTGCAAGCCACTTGCCTGGACGAACAGACAATGAGATTAAAAATTATTGGAACTCTCACCTGAGTAGGAAAATTTACACATTCCAAGGCACAACTACTGCTAAACCAGACATCATTACTCTCACCCTACCTCCTAAGAGGAAACGTGGTAGGACCAGTCGCTGGGCCATGAAGAAGAACATAACCTACTGTGCCCCAAAACAAAACCAACCACCGATACCGGCAGTTCCTCTACCATCAACGCCCCCACTTGAGACCGAAAAACATTCTTCCACCCATGAGAATACTACTACAACTATTCAAGAAGAAGAAAAAGTAGGTACTAATACCATGTGCCTTGAGGGTGAGAATAAAACAATAAACAATGAGGATGATGACATATGGGGACCCTATGATGAGGAAGTTATTAATGGCGGGGAGGGAGATCAGGTGTTGAATTTTGAATCTTACAATGACATAATGGGAAATTGCTGCCCCCATGCAAGTGGGGTTTGGACCATTTCTGGCGAAGGTTGCAGAGAGAGCAGTGAAGCGGTTGGGAATAAAACAAGTGACCACACAATGATGTCGAGTGGTCGGGACTTACAGTGTTCTTGTTCTGCCAAGGCTTCTTCTTCCTCTGACTTATGGGAAAGCGTGGTGCAGTTTGATCATAAGGATGAGTCTGCATGGGAGCACCAGCAGAGCCTCCTCACTTGGCTTTGCGAAGATGAAGACTGGGAGAAGGACTTCCAGAGCGTTGGTGAGATTGATCCTCAGAAACAAAATGACATGGTTGATTGGTTTCTCTCTTGA 1179 0.4546 MKVIPPRLDYEYGVEDTPWLCNVFLSKLTNHVADLGYMGRAPCCEKVGLKKGRWTTQEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISVEEENTIVKLHASLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYTFQGTTTAKPDIITLTLPPKRKRGRTSRWAMKKNITYCAPKQNQPPIPAVPLPSTPPLETEKHSSTHENTTTTIQEEEKVGTNTMCLEGENKTINNEDDDIWGPYDEEVINGGEGDQVLNFESYNDIMGNCCPHASGVWTISGEGCRESSEAVGNKTSDHTMMSSGRDLQCSCSAKASSSSDLWESVVQFDHKDESAWEHQQSLLTWLCEDEDWEKDFQSVGEIDPQKQNDMVDWFLS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02492 392 Pfam Myb-like DNA-binding domain 104 149 IPR001005 -
Spst1g02492 392 Pfam Myb-like DNA-binding domain 51 98 IPR001005 -
Spst1g02492 392 ProSiteProfiles Myb-like domain profile. 46 98 IPR001005 -
Spst1g02492 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 153 IPR017930 -
Spst1g02492 392 ProSiteProfiles Myb-like domain profile. 99 149 IPR001005 -
Spst1g02492 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 98 IPR017930 -
Spst1g02492 392 SMART sant 103 151 IPR001005 -
Spst1g02492 392 SMART sant 50 100 IPR001005 -
Spst1g02492 392 FunFam Myb transcription factor 108 153 - -
Spst1g02492 392 SUPERFAMILY Homeodomain-like 48 145 IPR009057 -
Spst1g02492 392 CDD SANT 108 149 IPR001005 -
Spst1g02492 392 FunFam Myb transcription factor 48 104 - -
Spst1g02492 392 MobiDBLite consensus disorder prediction 194 229 - -
Spst1g02492 392 Gene3D - 48 104 - -
Spst1g02492 392 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 38 241 - -
Spst1g02492 392 CDD SANT 53 98 IPR001005 -
Spst1g02492 392 Gene3D - 108 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02492 Spst-Chr1 33629628 33635005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02492 38 189 MYB Transcription Factor Family AT2G47460 69.136 4.70e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g02492 Myb_DNA-binding 7.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02492 K09422 - gmx:100817316 404.06