Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02484 ATGGCAGAGGTCGTTTTGCTAGTCGATGATTTGAAACTGCTTTCTGGGATTCCTCGCTGTAGAATTTGTCATGAAGAAGAGTTTGAAAGCATAGAAACCTTGGAAGCACCTTGCGCTTGTTCTGGAACCGTTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAACGAGAAGGGAAACACAATCTGTGAAATATGTCTCCAGCAATATGAACCCGGGTATTCAGCTCCACCCAAGAAGTCTAAGATAAATGATGAAGCAATGTCCATTAGGGAGGAGGAAGAAGAGTCAAACGGAAGAATAGAGATCATGGTTGAAGGTGTTGCAATGGAAAACGATTACTCTGAATGCAGTTCTGCCGCAGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCTTTTACACTTGTCTTACTCGTAAGACATTTTTTCGCTGTGCTTTCGAATGGAACGGAAGATTACCCATTTACACTACTTACTGTAATTATATTAAAAGCTAGCGGAATTATTATACCGATGTACATAGTAATTAAGATAATTGGAGCCATTCAGAACAGTAGTCAGCGCTACGAGGATTCTGACGATGACACATCCATGCCTGAAGAAGATGAGATACAGCATAATGTAAATTTAAGACATTCATAG 651 0.4101 MAEVVLLVDDLKLLSGIPRCRICHEEEFESIETLEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQQYEPGYSAPPKKSKINDEAMSIREEEEESNGRIEIMVEGVAMENDYSECSSAADRSASCCRSLAIAFTLVLLVRHFFAVLSNGTEDYPFTLLTVIILKASGIIIPMYIVIKIIGAIQNSSQRYEDSDDDTSMPEEDEIQHNVNLRHS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02484 216 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 192 IPR033275 -
Spst1g02484 216 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Spst1g02484 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Spst1g02484 216 CDD RING_CH-C4HC3_MARCH 20 67 - -
Spst1g02484 216 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Spst1g02484 216 SMART ringv_2 19 68 IPR011016 GO:0008270
Spst1g02484 216 Pfam Protein of unknown function (DUF3675) 73 182 IPR022143 -
Spst1g02484 216 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Spst1g02484 216 MobiDBLite consensus disorder prediction 192 216 - -
Spst1g02484 216 SUPERFAMILY RING/U-box 18 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02484 Spst-Chr1 33560627 33562695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02484 20 67 C3H Transcription Factor Family AT5G05830 40.385 3.08e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02484 - - gmx:100802379 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02484 1 33560627 33562695 Spst1g02484 1 33560627 33562695 ECH