Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02479 ATGACATCGATTCAACGTTCGGCGACGAGTTCTGGATCTGAAGGAGGAGATCAGCAAATCGACGAGAGGAAACGGAAGAGGATGCTTTCGAACCGCGAATCCGCGAGGCGATCGCGGATGAGGAAGCAGAAACAGCTGGAGGATTTGACCGATGAGGTTAGTAGATTGCAAGGCGCGAACAAGAAGCTTGTGGAGAACATAACGGCCAAGGAAGAAGCGTGCGTCGAAACCGAAGCCGCGAACAGCATTCTGAGAGCTCAGACCATGGAATTGACCGAACGATTGCGCTTCTTGAACTCTATCCTTGAAATCGCTGAAGAGGTCGGCGGATTATCCGTTGAGATTCCCGAAATTCCAGATCCTCTCCTCAAACCGTGGCAGATTCCTCATCCGACACAACCGATTATGGCAACCGCAAATATGTTTCTACGTTGA 435 0.5057 MTSIQRSATSSGSEGGDQQIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEVSRLQGANKKLVENITAKEEACVETEAANSILRAQTMELTERLRFLNSILEIAEEVGGLSVEIPEIPDPLLKPWQIPHPTQPIMATANMFLR 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02479 144 CDD bZIP_plant_GBF1 24 74 IPR045314 GO:0003700|GO:0006355
Spst1g02479 144 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Spst1g02479 144 Pfam bZIP transcription factor 23 74 IPR004827 GO:0003700|GO:0006355
Spst1g02479 144 FunFam BZIP transcription factor 21 72 - -
Spst1g02479 144 Coils Coil 32 66 - -
Spst1g02479 144 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Spst1g02479 144 SUPERFAMILY Leucine zipper domain 23 71 IPR046347 GO:0003700|GO:0006355
Spst1g02479 144 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 67 IPR004827 GO:0003700|GO:0006355
Spst1g02479 144 MobiDBLite consensus disorder prediction 1 51 - -
Spst1g02479 144 Gene3D - 21 78 - -
Spst1g02479 144 PANTHER BZIP TRANSCRIPTION FACTOR 44 5 138 - -
Spst1g02479 144 MobiDBLite consensus disorder prediction 1 16 - -
Spst1g02479 144 MobiDBLite consensus disorder prediction 17 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02479 Spst-Chr1 33511776 33512210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02479 21 142 bZIP Transcription Factor Family AT3G62420 58.197 6.00e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst1g02479 bZIP_1 1.9e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02479 K25786 - gmx:778144 246.128