Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02469 ATGTCGAAGAGAAAGTTCGGATTCGAAGGCTTCGGCATAAACCGGCAATCCACCTACAGCTTCGAGCGATCCCAGGCTCCTCAGAGGCTCTACGTCCCTCCCTCCGCCCGTCACGGCCACGACAACTACGAGGACACCGACCTCGACAACATCGACTACGACGACAACAACAACAACGATGAAGGGAACAAGAACAACAACGACGACGAGGAAATCGACCCTCTCGACGCCTTCATGGAGGGGATTCACGAGGAGATGCGGGCGCCGCCTCCGCCCAAGCCAAAGGAGAAGACCGAGGACCGGTACCGGGACGACGACGACGACGACCCCATGGAGAGCTTTCTGAAGGCGAAGAAGGATTTAGGGCTGACTCTCGCGTCCGAGGCGCTGCACGCTGGGTACGATTCCGATGAGGAGGTTTATGCTGCTGCCAAAGCCGTGGACGCTGGTATGATTGAGTATGATTCCGATGATAACCCTATTGTTATTGACAAGAAGAAAATTGAGCCCATTCCTGCTCTCGATCACTCTTCCATTGACTACGAGCCCTTCAATAAGGATTTTTACGAGGAGTCACCTTCAATATCAGGTATGAGTGAGCAGGATGTTAGTGAATACCGGAAGAGTTTGGCTATTCGTGTTTCTGGTTTTGATGTTCCAAAGCCAATAAAGGCTTTTGAGGACTGTGGGTTTCCATCACAGATTATGAATGCTATAAAGAAACAAGGTTATGAGAAGCCGACATCTATACAATGTCAGGCTTTACCAGTTGTGCTTTCTGGCCGGGATATCATTGGTATAGCAAAAACTGGTTCTGGTAAGACAGCTTCTTTTGTGCTTCCTATGATTGTGCATATTATGGATCAGCCTGAGCTTCAAAAGGAGGAAGGGCCTATAGGGGTGATATGTGCACCTACCAGAGAATTGGCTCATCAGATATATCTGGAGGCCAAGAAATTTGCAAAAGCGTATGGAGTACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAGCTTGAGCAGTTCAAAGAACTCAAGGCTGGATGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAGATGAAGGCATTGACAATGACGAGAGCAACTTACCTGGTACTTGATGAGGCTGATCGGATGTTTGATCTTGGTTTTGAGCCTCAAGTAAGGTCCATTGTTGGGCAGATTAGGCCGGACCGCCAAACTTTACTCTTTTCTGCAACAATGCCCCGTAAAGTTGAAAAGTTGGCTAGGGAAATCCTTACTGATCCTATTAGAGTAATTGTTGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCATGTGATTCCTTCTGATGCTGAAAAATTACCTTGGCTTCTGGAAAAGCTATCTGAAATGATTGATCAAGGGGATACCCTAGTTTTTGCTTCCAAAAAGGCCACTGTAGATGAAATTGAATCACAGTTGGCTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGGATGGATATTTTGCAGAAGTTTAAATCTGGTCTCTACCATGTGCTCATTGCAACTGATGTTGCTGCCCGGGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGTCGTGCTGGTGACAAGGATGGGGTTGCATACACGCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTCAACAGTTTAGTTGCTGCTGGTCAGAATGTGTCCGTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAGAGGTAGAGGTGGTGGCGGAGGTGGCCGTGGTGTGCGAGGAGTGGATTTTGGGTTGGGCATCGGATATAATCCTGAGTCAAACAACGCACCATCTAACGCAGTTCCTAGTCGATCTGCCGCTGTAAATTCTCTGCGGACAGGAATGATGTCACAATTTAGGAATAACTTTGTTGCTGCTTCGTCAAACTCTCAGAATGAAGGTTTTGGTAACAATACAAGCATGCCTGCCAATAAGAGACCAGCACTCCCTGGTTTTGTATCTGGTGGATCAATTGGTGGAGACGTAAATACATATCAGCACACTGCCTCACCCAGTCCTGCTTCGTCAGCCGTAAATTTCACCACTCAAGGTTCTGGAGTAAATCCTGGCCAGAAGAGCATTAATAGTTCTAAACCCAAAGAGAGGCGGAGGCCATCAGGTTGGGATAGATAG 2307 0.4699 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSARHGHDNYEDTDLDNIDYDDNNNNDEGNKNNNDDEEIDPLDAFMEGIHEEMRAPPPPKPKEKTEDRYRDDDDDDPMESFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEESPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVIVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLSEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSNAVPSRSAAVNSLRTGMMSQFRNNFVAASSNSQNEGFGNNTSMPANKRPALPGFVSGGSIGGDVNTYQHTASPSPASSAVNFTTQGSGVNPGQKSINSSKPKERRRPSGWDR 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02469 768 MobiDBLite consensus disorder prediction 717 753 - -
Spst1g02469 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 255 430 IPR014001 -
Spst1g02469 768 FunFam probable ATP-dependent RNA helicase DDX17 186 433 - -
Spst1g02469 768 MobiDBLite consensus disorder prediction 84 112 - -
Spst1g02469 768 MobiDBLite consensus disorder prediction 754 768 - -
Spst1g02469 768 CDD DEADc_DDX42 235 430 - -
Spst1g02469 768 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 376 384 IPR000629 -
Spst1g02469 768 Gene3D - 432 608 IPR027417 -
Spst1g02469 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 455 604 IPR001650 -
Spst1g02469 768 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 186 604 - -
Spst1g02469 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 599 IPR027417 -
Spst1g02469 768 CDD SF2_C_DEAD 442 574 - -
Spst1g02469 768 Gene3D - 187 431 IPR027417 -
Spst1g02469 768 MobiDBLite consensus disorder prediction 57 72 - -
Spst1g02469 768 Pfam DEAD/DEAH box helicase 248 419 IPR011545 GO:0003676|GO:0005524
Spst1g02469 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 433 IPR027417 -
Spst1g02469 768 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 224 252 IPR014014 GO:0003724
Spst1g02469 768 SMART helicmild6 483 564 IPR001650 -
Spst1g02469 768 Pfam Helicase conserved C-terminal domain 458 564 IPR001650 -
Spst1g02469 768 MobiDBLite consensus disorder prediction 688 702 - -
Spst1g02469 768 SMART ultradead3 243 445 IPR014001 -
Spst1g02469 768 MobiDBLite consensus disorder prediction 688 768 - -
Spst1g02469 768 MobiDBLite consensus disorder prediction 611 636 - -
Spst1g02469 768 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02469 Spst-Chr1 33406274 33410188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02469 224 580 Eukaryotic Initiation Factors Gene Family AT3G13920 35.278 1.60e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02469 K12835 - gmx:100814854 1324.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02469 1 33406274 33410188 Spst1g02469 1 33406274 33410188 ECH