Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02465 ATGAGGAAGATGATGGGTGTGAAGACGAAGGAGGACTATGCCATAGGGTCTTCGTCCTTTTTCCCTTGTAATTATCCATTCCTTGATTTTTCTGAAGATAAGGGCTCTTTAGGGTTTATGGAGTTGTTGGGTGTGCAAGACTATAGTCCTCTGCTTGATTTGCCTTTAGGGTCCGACATGGCAGTGCCTCAAACATCTGATCTTAAGGAACCACCTCAGACTAAGAAAGAATGCTCCGAGGTAACCAACCAGCAACCTGCGACTCCGAACTCTTCATCCATTTCCTCCGCGTCCAGTGAGGCTCTCAATGATGAACAACAGAATAGAACTGTAGACCAAACACATGATGAACACCGCAAGACAAAAGAACAGTTGAAGTCTAAGAAGACAAACCAGAAGAGACAGAGAGAACCGAGAATCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTACCGTTGCACCAGTGTTTCGTGTAATGTGAAGAAACGCGTGGAGCGATCTTTTACCGACCCAAGCATTGTGGTGACAACCTACGAAGGCCAACACACCCATCCAAGCCCAGTTATAGGTCGCTCCAACAACTTTGGTTCGCTAATGTCTGGATCTGGGGACTACATGTCTCGTTATTATCAGCACCATCAACAACAAATCCACGTCAATGCATTGTCTTCTTCGGGCTTCTTCCCTTCAAAGAATGGCACTTTTCCTCACGAAACTGTGTTGTTGAGTGACAATGGGCGTCTTCAAGATGTTGTTCCTTCACATATGTTCAAAGGAGACTAG 855 0.4596 MRKMMGVKTKEDYAIGSSSFFPCNYPFLDFSEDKGSLGFMELLGVQDYSPLLDLPLGSDMAVPQTSDLKEPPQTKKECSEVTNQQPATPNSSSISSASSEALNDEQQNRTVDQTHDEHRKTKEQLKSKKTNQKRQREPRIAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSIVVTTYEGQHTHPSPVIGRSNNFGSLMSGSGDYMSRYYQHHQQQIHVNALSSSGFFPSKNGTFPHETVLLSDNGRLQDVVPSHMFKGD 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02465 284 Gene3D WRKY domain 135 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g02465 284 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 83 236 IPR044810 GO:0003700
Spst1g02465 284 Coils Coil 115 135 - -
Spst1g02465 284 MobiDBLite consensus disorder prediction 77 108 - -
Spst1g02465 284 FunFam WRKY transcription factor 57 137 211 - -
Spst1g02465 284 PIRSF WRKY_txn_fact_IIc 1 284 IPR017396 GO:0003700
Spst1g02465 284 MobiDBLite consensus disorder prediction 62 138 - -
Spst1g02465 284 ProSiteProfiles WRKY domain profile. 146 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g02465 284 MobiDBLite consensus disorder prediction 109 138 - -
Spst1g02465 284 SMART WRKY_cls 151 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g02465 284 Pfam WRKY DNA -binding domain 152 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g02465 284 SUPERFAMILY WRKY DNA-binding domain 143 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02465 Spst-Chr1 33300117 33301434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02465 17 227 WRKY Transcription Factor Family AT2G47260 51.867 1.18e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst1g02465 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02465 - - vra:106757666 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02465 1 33300117 33301434 Spst1g02465 1 33300117 33301434 ECH
Spst1g02465 1 33300117 33301434 Spst7g01427 7 61723238 61724935 PCT