Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02464 ATGGATATTCCGAAGGAGCAGATAGAGCAGAGGCTCAATTTCAACGGAGACCCTCCAAACCCTCATTCTTACGACAATGGCAACGGCTTCAACCACTTCCAACCCCTCGATTCTGGATACGCTCTTAACCATTCCGTTCCTCGCCCTCTCCGCAAACGCTCCTGGCACCACTCCAGCCAAGGAACTTCTCCAGATCGAGTGGACGGTGCGTGTCACGTAAAAGTGTATGTTGCTCCTGTTCCGAGAACTGCTACGGAAGCTGAGTTCTCCTTGTATTACACCTCCCTCATCAAAAGAGTTGCATTTAGCCATCTTTTGATCCGCCCTGTTTTTGAAGAACATGGAACTATTGTTGAGGTAGTTCTTTTAAAAGATAAGAGAACTGGTGAAAGGCAAGGAAGTTGTTTTGTAAAATATGCAACATTTGATGAAGCTGATAGGGCTATTAAGGCTTTAAACAATCAATATACATTTGCTGGGGAATCATATCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGTCTTGGGGTTCGAGGGTTCTGCCCTAATATGGAAAAGAAAGATCCTTTAGAAGGCAAACATCTCAGCCTTTTCCCGGATAGCTATAAAGTTTTTGTTAGTTGCTTCAACAAAGAGGCTTCAAAAAAGGAAATTGAAGAACTAGCAAAAAATGTTAGTTACCAACAGGTTATTATTCATGTTGAGTTTCTGTTTGTGCAGATATTTTCCCCTTATGGGCATGTAGAAGATATCTTCATGGCGACGAAACGGGGATATGCTTTTGTAAAATTTTCTAATAGAGAAATGGCATTGGCTGCAATCAAAGGACTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAAACCTAGGATGGGAGAATCAAGGGGCAACTATTTACCCGTGAATGCAAATTTTGGACCTTGTTCTCAAGAACCAGCAGTATGGCCACTACCAAATTTTAGTGATTCCAATCGTGGAGGAAGTATTTTGCCTATTGCCCCGCATCATTCCACAATTGCAAACCCACAAGTTCCTACTCATATGCAAAACTGGGAACCTGGTGCTACTGTGGTACAACATCCATTTCCTCCCCAACAATTGCATGCACAGTTGGCTTCAATGCCTTTTGCTTCTATTCAAGCTCCACAATTGCCGTCCCAGCAATTTATTACTGAGGTGCAGAGACAACCGCATCCAGCAGATTCATCAGTTCAAAATATAGAGCAGCATAGTTCACAGCTGCCTTCTCAGACCGGAAGCAACCTTAGCACAGCTGCTGGCAGTACCCCACCCGATATGCCTTCAAGTCCTCAAGTTGAAGATTATCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTGTGAAGTACTACTACAACTGTATCACTTGTGAAAGCAGATGGGAGAAGCCTGAGGAGTATGCCTTGTACGAGAAAGAATCTACGAAGCAGCCGGAGCGGGAGGATAATTGCTGTAGTCTCTCACAATTTTTGTTATCTTCCTCTCTACAAGTTGCTGAAAAACAACAGAGAGGAACGCATAATGGGGAAGGAATAGCGGGGGCCCAGTGGCTCTTCGAAGGTGGCGTATCATATGCATCCTCTTACTGCGCGTTGATGGATCATATGGCATGCAGCACTTACTCAATGAGGTTAAATCGAATTGTCAATGGTTGA 1719 0.4392 MDIPKEQIEQRLNFNGDPPNPHSYDNGNGFNHFQPLDSGYALNHSVPRPLRKRSWHHSSQGTSPDRVDGACHVKVYVAPVPRTATEAEFSLYYTSLIKRVAFSHLLIRPVFEEHGTIVEVVLLKDKRTGERQGSCFVKYATFDEADRAIKALNNQYTFAGESYPVVVKFADRELERLGVRGFCPNMEKKDPLEGKHLSLFPDSYKVFVSCFNKEASKKEIEELAKNVSYQQVIIHVEFLFVQIFSPYGHVEDIFMATKRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKKPRMGESRGNYLPVNANFGPCSQEPAVWPLPNFSDSNRGGSILPIAPHHSTIANPQVPTHMQNWEPGATVVQHPFPPQQLHAQLASMPFASIQAPQLPSQQFITEVQRQPHPADSSVQNIEQHSSQLPSQTGSNLSTAAGSTPPDMPSSPQVEDYPECDWSEHYCPDGVKYYYNCITCESRWEKPEEYALYEKESTKQPEREDNCCSLSQFLLSSSLQVAEKQQRGTHNGEGIAGAQWLFEGGVSYASSYCALMDHMACSTYSMRLNRIVNG 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02464 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 284 IPR000504 GO:0003723
Spst1g02464 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 158 IPR000504 GO:0003723
Spst1g02464 572 PANTHER RNA BINDING PROTEIN 34 493 - -
Spst1g02464 572 MobiDBLite consensus disorder prediction 404 448 - -
Spst1g02464 572 ProSiteProfiles WW/rsp5/WWP domain profile. 460 487 IPR001202 GO:0005515
Spst1g02464 572 SUPERFAMILY RNA-binding domain, RBD 38 178 IPR035979 GO:0003676
Spst1g02464 572 ProSitePatterns WW/rsp5/WWP domain signature. 460 485 IPR001202 GO:0005515
Spst1g02464 572 Gene3D - 64 176 IPR012677 -
Spst1g02464 572 Gene3D - 199 306 IPR012677 -
Spst1g02464 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 172 IPR000504 GO:0003723
Spst1g02464 572 MobiDBLite consensus disorder prediction 404 454 - -
Spst1g02464 572 SMART ww_5 455 487 IPR001202 GO:0005515
Spst1g02464 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 299 IPR000504 GO:0003723
Spst1g02464 572 SUPERFAMILY RNA-binding domain, RBD 240 309 IPR035979 GO:0003676
Spst1g02464 572 CDD WW 458 487 IPR001202 GO:0005515
Spst1g02464 572 SMART rrm1_1 205 295 IPR000504 GO:0003723
Spst1g02464 572 SMART rrm1_1 74 168 IPR000504 GO:0003723
Spst1g02464 572 Pfam WW domain 458 485 IPR001202 GO:0005515
Spst1g02464 572 Gene3D - 456 500 - -
Spst1g02464 572 SUPERFAMILY WW domain 459 491 IPR036020 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02464 Spst-Chr1 33290689 33299428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02464 74 329 Eukaryotic Initiation Factors Gene Family AT4G34110 24.907 1.13e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02464 1 33290689 33299428 Spst1g02464 1 33290689 33299428 ECH