Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02458 ATGGAGAGGAGTTTATCAGAAAATGGGTCGTCAGGAACATATGGAAGCAGTGAAGAGGAGATGTCAATAACGAAAGGTCCATGGACAGAGGGTGAAGATTCAGTTCTCTTCAATTACATTACAGTCCACGGGGAAGGCCACTGGAACTCTGTCGCTCGCTACACAGGCATGCAAACATTCATGTTAAGATGGTTGAACTACTTGCGTCCTAACGTTCGACGTGGGAACATAACCCTCCAAGAACAGCTAATGATTCTTGACCTCCATTCCCGTTGGGGCAACAGGTGGTCGAAAATAGCTGAACAGTTACCGGGGAGAACAGACAACGAGATTAAGAACTATTGGAGAACGCGAGTAGTGAAGCAGGCTAAGCAACTGAATTGTGATGTGAACAGTAAACAATTCAGAGACACGTTGCGTTTTGTATGGATGCCACGTATGCTGGAGCGGATTCAGGCTCAACCCTCATCATCAAGCCAAGCCCAAACCTCCTTAATCTCCAACGCTCAAGCCCAGAGCGACCCTTGTGGAGTCACCACCACCACCGCCACCGCCAACAACCCGCGTTTGCTGTCAGAGGCTTCATGGGCAGTTGATGTCCACGCGCCCTCTCTCTCTGACTCTGCCGCGTCTTACAATTTAATGGGTGGTGGAAATTTGTCATCATATGGTGCAGAAGAAGGTTGTAGCAGCCTCTGGGAGGAGAGAAAGTATGGGTACTCGGACATAGCAGGAAGTGGTTTTGGTGGCGTTGACTTGTGGACAGACGAGAATATTTGCTTCTTGCAACAGCAGCTCGCTGATGACTTACCTTACAATTAG 822 0.4878 MERSLSENGSSGTYGSSEEEMSITKGPWTEGEDSVLFNYITVHGEGHWNSVARYTGMQTFMLRWLNYLRPNVRRGNITLQEQLMILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLNCDVNSKQFRDTLRFVWMPRMLERIQAQPSSSSQAQTSLISNAQAQSDPCGVTTTTATANNPRLLSEASWAVDVHAPSLSDSAASYNLMGGGNLSSYGAEEGCSSLWEERKYGYSDIAGSGFGGVDLWTDENICFLQQQLADDLPYN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02458 273 Gene3D - 78 119 - -
Spst1g02458 273 CDD SANT 78 117 IPR001005 -
Spst1g02458 273 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Spst1g02458 273 ProSiteProfiles Myb-like domain profile. 20 68 IPR001005 -
Spst1g02458 273 FunFam MYB transcription factor 78 141 - -
Spst1g02458 273 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 181 IPR044676 GO:0003700|GO:0006355|GO:0043565
Spst1g02458 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 56 IPR017930 -
Spst1g02458 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Spst1g02458 273 MobiDBLite consensus disorder prediction 159 182 - -
Spst1g02458 273 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g02458 273 MobiDBLite consensus disorder prediction 1 25 - -
Spst1g02458 273 SUPERFAMILY Homeodomain-like 22 115 IPR009057 -
Spst1g02458 273 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Spst1g02458 273 SMART sant 73 121 IPR001005 -
Spst1g02458 273 SMART sant 24 70 IPR001005 -
Spst1g02458 273 Gene3D - 24 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02458 Spst-Chr1 33253878 33256433 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02458 16 269 MYB Transcription Factor Family AT2G47190 45.076 1.81e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst1g02458 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02458 K09422 - gmx:100819467 391.734