Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02456 ATGGATATTAACATGAAGAAATCACTGCCCACAGAACAGAAGCAGAATAGTGAAGACATTAGAAAAGGTCCATGGAGCCTTGAAGAGGACACCATTCTCCAAAACTACGTTGCCACCTACGGCGAGGGTCGTTGGAATTCCGTCGCACGCTCTGCAGGAACTTATCATACTCTCTTCATACGCTGTCAAACTCTCTCAGCATTGCTAAGATGGTTAAACTACTTGCGCCCTGATGTTCGTCGTGGAAATATAACACTCCAGGAACAGTTAACCATTCTTGACCTTCACTCTCGGTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCCGGTAGAACAGACAACGAAATAAAGAATTATTGGAGGACTCGAGTGATTAAGCAAGCAAGGAATCTCAACTGTGACGTCGACAGTAAACAGTTCAAAGATGCCTTGCGTTACGTGTGGATGCCCCGTTTGATTGAGCGGATTCAACCATCATCGGAAACTCACGACCCGCCCCATGTGCCATCCTCCAAACTTGACTTGATCCCGGATCCCCCGGTCCATCACCAAATCGGGTCACACGGTTCGTGTTCAGGTTCCACAACCTTGGATTCTGAAGAATTGGGTTATAATGTTTCAATTTGGGGCGGATGTGAAGACTTGGAACAGGGGACTGTCACGGTGCCTTTAGGTGGTGGGGACTTAATGGAGAGTTTTTGGGATGATGAGAATCTGTGGCTTATGCGACAAATTTGTGATGATCTGGAACTTAAAGACAATTTCCTTACGTGA 780 0.4667 MDINMKKSLPTEQKQNSEDIRKGPWSLEEDTILQNYVATYGEGRWNSVARSAGTYHTLFIRCQTLSALLRWLNYLRPDVRRGNITLQEQLTILDLHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVIKQARNLNCDVDSKQFKDALRYVWMPRLIERIQPSSETHDPPHVPSSKLDLIPDPPVHHQIGSHGSCSGSTTLDSEELGYNVSIWGGCEDLEQGTVTVPLGGGDLMESFWDDENLWLMRQICDDLELKDNFLT 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02456 259 SUPERFAMILY Homeodomain-like 19 122 IPR009057 -
Spst1g02456 259 SMART sant 80 128 IPR001005 -
Spst1g02456 259 SMART sant 21 77 IPR001005 -
Spst1g02456 259 Gene3D - 19 81 - -
Spst1g02456 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 50 IPR017930 -
Spst1g02456 259 Pfam Myb-like DNA-binding domain 22 61 IPR001005 -
Spst1g02456 259 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Spst1g02456 259 MobiDBLite consensus disorder prediction 1 21 - -
Spst1g02456 259 CDD SANT 85 124 IPR001005 -
Spst1g02456 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Spst1g02456 259 Gene3D - 85 126 - -
Spst1g02456 259 FunFam MYB transcription factor 85 148 - -
Spst1g02456 259 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Spst1g02456 259 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 166 IPR044676 GO:0003700|GO:0006355|GO:0043565
Spst1g02456 259 ProSiteProfiles Myb-like domain profile. 17 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02456 Spst-Chr1 33239178 33240104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02456 19 161 MYB Transcription Factor Family AT1G48000 66.434 1.65e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g02456 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02456 K09422 - gmx:100797220 347.436