Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02437 ATGGGTGGCGATCCAGGCGCAACCACCTCCACGGCATACTCGCAGGCCAAGATTTCAGTGTGGTGGGACATTCACAACTGTTGCGTTCCTAACGGCCAAGACGCTCACTCCGTCGCGCAGAACATAACCTCCGCTCTCGTCAACTCCAACTACCGCGGCGCCGTCTCCATCTCTGCCTACGGCGACACCAACCGCATTCCGCCGCCCATCCAGCACGCCCTCTCCAGCACCGGCGTCGCTCTCAACCACATCCCCGCCGGTGTGAAAGATGCGAGCGACAGGAAGATCCTAGTGGACATGCTGCTATGGGCAATAGACAATCCCGCCCCCGCTAACTACTTGCTCATATCCGGCGACAGAGACTTCTCCAACGCGCTTCACCAACTCAGCATGCGAAGGTACAACATTCTCCTCGCGCATCCGCCGCAAATTTCTCCCTCCCTCTTCGCCGCCGCCAAAGTCGTTTGGCTTTGGACAACCCTCTCCGCCGGCGGTGGCCCTCTCCACGTTGCCGATTCCGACTCTGCCTCCGCCGTTAAACCCACCCCTCTCCCTGAACCACCTATTCATTTCAAATCCGAAACTAAATACTTAAGAAAAAGTACTACGAAATCCCCAATTCCACCTCTTCAAATACCTGACGAGAGTAAGAGTACCAACAATGATGTCCCTAATACGGAACCGCCCCAACCACCGAGAAAGTTCGTTATCGGAGCTCCTCATGAATTCTTTGCTAGCAAATGTAACCAGCCCGTAATCCCCATCCCAATGCCAACTCTTTGTAAGTTGAATGATGAAACTTCGATTCCTCAAGATTCACGCCAACATTCTTCGAGGCAAAAGTTAATTGAAATTCCTCATGTTCTGAATGTTGCTACTCATACGTGGGATGGTTCTAGACTAAGCATTAGCCATCCTGAGTTCAATGTGGAGAGGCTTATCGATGTTATTATGAGAACTCTAAACTTTCTCAAGGTTGAAAAGGTTGTGTCCACCGAGGCAAATATAACCGATTGCATTCGTTATGGGGATCCCGTATATCAAACAATTGATGTTAGGAAGGCCTTGGATTTTGCCATTGACCAAGGTAGGATAGAGAAACGATTCTTTGGGGCGTTGCATTTGTATATTGGGAGAAATGAGACGCTCTGGAAGTGTGTGAACCATGCAGGGGGTCATCCTAGTGATTACCCACAAGAAACGTGGGACAGAGTTAAGCAATTCCTTACTTCATCAAGAGGGAGATCGTTGCTTTTGGTTTCGCGTTGCAGATTTGAAGCCTGTTTGATTCTAAAGAGATCGTGCCTTGAAGAGGTTGTATTAGGGGACGCGCTTAAAATTCTAGAGATGATGATCACAGTCAAGAAATGGATTATACATCATCATAGTGGGTGGCAGCCGATTACCATTAGGCTTAAGGAGAGTAAAGGTGATGCAGATATTGATTCTGATGATAATCTAGATCCAATGTGA 1473 0.4881 MGGDPGATTSTAYSQAKISVWWDIHNCCVPNGQDAHSVAQNITSALVNSNYRGAVSISAYGDTNRIPPPIQHALSSTGVALNHIPAGVKDASDRKILVDMLLWAIDNPAPANYLLISGDRDFSNALHQLSMRRYNILLAHPPQISPSLFAAAKVVWLWTTLSAGGGPLHVADSDSASAVKPTPLPEPPIHFKSETKYLRKSTTKSPIPPLQIPDESKSTNNDVPNTEPPQPPRKFVIGAPHEFFASKCNQPVIPIPMPTLCKLNDETSIPQDSRQHSSRQKLIEIPHVLNVATHTWDGSRLSISHPEFNVERLIDVIMRTLNFLKVEKVVSTEANITDCIRYGDPVYQTIDVRKALDFAIDQGRIEKRFFGALHLYIGRNETLWKCVNHAGGHPSDYPQETWDRVKQFLTSSRGRSLLLVSRCRFEACLILKRSCLEEVVLGDALKILEMMITVKKWIIHHHSGWQPITIRLKESKGDADIDSDDNLDPM 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02437 490 Gene3D - 11 160 - -
Spst1g02437 490 MobiDBLite consensus disorder prediction 173 233 - -
Spst1g02437 490 CDD PIN_limkain_b1_N_like 17 141 - -
Spst1g02437 490 MobiDBLite consensus disorder prediction 200 224 - -
Spst1g02437 490 Pfam NYN domain 17 153 IPR021139 GO:0004540
Spst1g02437 490 PANTHER LIMKAIN B LKAP 14 345 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02437 Spst-Chr1 33059120 33060905 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02437 7 173 C2H2 Transcription Factor Family AT5G61190 71.856 2.10e-72 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02437 - K17573 gmx:100819329 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02437 1 33059120 33060905 Spst1g02437 1 33059120 33060905 ECH