Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02435 ATGTCTGGCAAAATAATTGTCTCAGCTGTTTCTCTCATCCTCGTGGTCGGTGTTGCCATCGGTGTTGTAGTGGCCGTTAACAAAAAGGGTGATGATCCCACCATACAATCTCATCAAAAATCCGTCGGCGTTATCTGTAAAAACACCGATGACCAAAAACTCTGCCATGACACTCTCAGCTCCGTCAAGGGTGCTGACGCCGCTGACCCCAAGGCTTACATCTCCACGGCAGTGAAAGCCACCATGGACAGCGTGATCAAAGCGTTCAATATGAGTGATCGGCTCACAACCGAGCACGGAGACAAAGATAGTGGCATTAAGATGGCCCTCGACGATTGCAAGGACTTGCTGCAATCCGCCATGCAGAGTCTTCAGTTCAGCATTGACATTCTGCAAAATAACAACGTCCAAGCCGTGCAAAACCAAGAAGCTGATTTCAGGAACTGGCTCAGTGCGGTTATCTCGTACCAGCAGGCATGCATGGAAGGTTTCGACGATGGCAAAGACGGTGAGAAGAGTATCAAGGAGCAGTTGCAAACACAGACTTTGGACCATGTGCAGAAAATCACCGGCGTCGCCCTTGATATCGTGACTGGTTTGTCAAACATCCTCGAGCAATTCGGGTTGAAGTTTAATCTAAAACCCTCTTCTCGCCGTCTTCTCAGCGATGACGGGTACCCCACTTGGTTCTCTGCCTCAGACCGCAAGCTCTTGGCTCAGCTTCAACGCCAGGGATGGAGATCTCGCATCACACCCAATGTCATTGTTGCCAAGGATGGTTCTGGTCAGTTCAAAACCATTGCCCAGGCTATTGCTTCTTACCCAAGCAACTTCCAGGGTAGATACTACATCTATGTTAAGGCTGGTGTCTATGATGAGTACATCACCGTTCCCAAGAACGCCGTCAATATTCTCATGTACGGTGATGGCCCTACAAAGACCATTGTCACCGGTCGCAAGAACTACGCCGAGGGTGTCAAGACCATGCAGACTGCCACTTTCGCCAACACTGCTCAGGGCTTCATTGCTAAGGCAATGACATTCGAGAACACCGCTGGAGCTGCCGGACATCAAGCCGTGGCTTTCAGGAACCAGGGAGACATGTCAGCAGTGATTGGTTGTCACATTTTGGGTTACCAAGACACCTTGTACGTCCAAACCAACAGGCAATTCTACCGCAACTGTGTTATCTCCGGCACCATTGACTTCATCTTCGGCACCTCACCTACCCTGATCCAGCACTCCGTCATCATTGTGAGGAAGCCCCTGGGCGACCAGTTCAACACCGTAACCGCCGACGGCACACTCCGACAGAACATGGACACTGGAATCGTGATCCAGGACTGCGAGATCGTCCCCGAAGCCGAGCTCTTCCCCGTGAGGTTCCAGTACAAGTCCTACTTGGGCAGGCCATGGAAGCAATACTCAAGGACCGTTGTCATGGAATCCACCATCGGTGACTTCCTTCACCCCGAAGGATGGTGCCCTTGGGCAGGAGCATTCTTCGAAGACACCTTGTACTATGCTGAGTACAACAACGCCGGACCTGGTGCCGACGTCAGCAAAAGAATCAAGTGGAAGGGTTACCATGGTCTCATTTCCCGCGAAGAAGCTACCAAGTTCACCGCTGCTCAATTCCTCAAGGCTGGAGCCAACGACGGAACCGACTGGTTGAAGGCTCTTCATGTTCCTCACGTCCTTGGCTTCGCCAAAGCTTAA 1719 0.5148 MSGKIIVSAVSLILVVGVAIGVVVAVNKKGDDPTIQSHQKSVGVICKNTDDQKLCHDTLSSVKGADAADPKAYISTAVKATMDSVIKAFNMSDRLTTEHGDKDSGIKMALDDCKDLLQSAMQSLQFSIDILQNNNVQAVQNQEADFRNWLSAVISYQQACMEGFDDGKDGEKSIKEQLQTQTLDHVQKITGVALDIVTGLSNILEQFGLKFNLKPSSRRLLSDDGYPTWFSASDRKLLAQLQRQGWRSRITPNVIVAKDGSGQFKTIAQAIASYPSNFQGRYYIYVKAGVYDEYITVPKNAVNILMYGDGPTKTIVTGRKNYAEGVKTMQTATFANTAQGFIAKAMTFENTAGAAGHQAVAFRNQGDMSAVIGCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQHSVIIVRKPLGDQFNTVTADGTLRQNMDTGIVIQDCEIVPEAELFPVRFQYKSYLGRPWKQYSRTVVMESTIGDFLHPEGWCPWAGAFFEDTLYYAEYNNAGPGADVSKRIKWKGYHGLISREEATKFTAAQFLKAGANDGTDWLKALHVPHVLGFAKA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02435 572 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Spst1g02435 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Spst1g02435 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 201 IPR035513 -
Spst1g02435 572 SUPERFAMILY Pectin lyase-like 250 565 IPR011050 -
Spst1g02435 572 Gene3D - 247 569 IPR012334 -
Spst1g02435 572 FunFam Pectinesterase 247 569 - -
Spst1g02435 572 CDD PMEI-like_3 45 202 - -
Spst1g02435 572 Pfam Pectinesterase 253 548 IPR000070 GO:0030599|GO:0042545
Spst1g02435 572 FunFam Pectinesterase 38 201 - -
Spst1g02435 572 Pfam Plant invertase/pectin methylesterase inhibitor 44 196 IPR006501 GO:0004857
Spst1g02435 572 NCBIfam pectinesterase inhibitor domain 10 198 IPR006501 GO:0004857
Spst1g02435 572 PANTHER PECTINESTERASE 16 559 - -
Spst1g02435 572 SMART PMEI_2 37 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02435 Spst-Chr1 33049805 33051523 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02435 5 569 Carbohydrate Esterase AT3G05610 40.280 8.62e-136 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02435 K01051 - gmx:100815015 948.732