Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02426 ATGGAGGACGAACCTTTTCTCACAACAACCACCACCACTACTTCGCTACGCGCCGATTTCCCTTTGCAATCTTCGAAGTCATTCGACGACGTCACCTCCACACGCGCCGCGCGTCAGGCCGAGATTCAAGAGCACCAGTCCCAGCCGTTTCCCTTTCACCCCAAGAAGAAAAAACTCAGTCGTTGCAAGACAGCACCGGCCATGGTTACCATGCGAGACCTCAAACCTAAGACGTCCCAAGTCCCCAAACCTCAGTCCAGCTCCATAATCCGACAAGGCATGTGCTTATTAGCCGTGTACCTCTCTGTCGGAGTCGCCATTTACTCTTTCAACAGGGACCATTTCTCCGGCATCGAGACCCACCCTGTGGTTGATGCCCTTTACTTTTGTATAGTGACCATGTGTACCATAGGTTACGGTGACATCGCTCCCTTGACCCCACTTACAAAGGTCTTCGCTTGTGTCTTCGTGCTGGTGGGATTCGGCTTTATAGACATACTCCTCAGTGGCCTTGTTAACTTTGTTTTGGATGTGCAAGAGAACATGATCCTTACGGGGCTCCAAATGGGTGCAACTGCGAGGGATGGTTTTTCTGCGAGGAACTACATCGTTGATGTGGCGAAGGGGAGGATGAGGATCAGGTTGAAGGTAGGTTTGGCGCTTGGGGTTGTGGTGCTGTGCATTGGGATTGGGTGTTTGGTGTTGTACTTTGTGGAGGGTTTGGATTGGGTTGATTCTATTTACTTGTCGGTTATGTCTGTCACAACAGTTGGGTATGGAGACCGGGCGTTTAAGACACTTCCCGGTCGCTTATTTGCCGCTATTTGGTTGCTCTTTTCTACTTTGATGGTGGCGCGGGCTTTCCTCTATTTGGCAGAGGCCAGAATTGATAGAAGGCATCGCAGAATGGCCAAGAAGGTGCTGCAAAGAGAAATTACTGTTGAGGATTTGCTTGCTGCTGATATCAACCACACCGGTTTCATCAGCAAGTCAGAGTATGTAATCTTCAAGCTGAAAGAGATGGGGAAAATACAGGAAAAAGATGTGCTGCAAATTTGTGACCAATTCGGGAAGCTTGACCACTCTAACTGTGGGAAGATAACACTGCCTCATCTCTTGGGGGGCACTTTATGA 1134 0.4938 MEDEPFLTTTTTTTSLRADFPLQSSKSFDDVTSTRAARQAEIQEHQSQPFPFHPKKKKLSRCKTAPAMVTMRDLKPKTSQVPKPQSSSIIRQGMCLLAVYLSVGVAIYSFNRDHFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPLTKVFACVFVLVGFGFIDILLSGLVNFVLDVQENMILTGLQMGATARDGFSARNYIVDVAKGRMRIRLKVGLALGVVVLCIGIGCLVLYFVEGLDWVDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRMAKKVLQREITVEDLLAADINHTGFISKSEYVIFKLKEMGKIQEKDVLQICDQFGKLDHSNCGKITLPHLLGGTL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02426 377 SUPERFAMILY Voltage-gated potassium channels 85 175 - -
Spst1g02426 377 ProSitePatterns EF-hand calcium-binding domain. 321 333 IPR018247 -
Spst1g02426 377 PRINTS Two pore domain K+ channel signature 255 264 IPR003280 GO:0005267|GO:0016020|GO:0071805
Spst1g02426 377 PRINTS Two pore domain K+ channel signature 132 160 IPR003280 GO:0005267|GO:0016020|GO:0071805
Spst1g02426 377 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 123 350 IPR003280 GO:0005267|GO:0016020|GO:0071805
Spst1g02426 377 Gene3D - 68 186 - -
Spst1g02426 377 Gene3D - 200 320 - -
Spst1g02426 377 FunFam Two-pore potassium channel 5 78 188 - -
Spst1g02426 377 Pfam Ion channel 97 175 IPR013099 -
Spst1g02426 377 Pfam Ion channel 225 293 IPR013099 -
Spst1g02426 377 SUPERFAMILY Voltage-gated potassium channels 208 315 - -
Spst1g02426 377 FunFam Two-pore potassium channel 3 200 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02426 Spst-Chr1 32962404 32964483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02426 25 377 Ion Channels AT4G01840 65.738 2.17e-162 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02426 K05389 - gmx:100780438 616.305