Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02424 ATGTCTGATATGATGAGGCATGGAAATGGCTTGCATGATGTAGAGCTTAAACATGGTGAGAGAAGGGCACCAGAGAGCAGCACAAACGGGGAAAAGATAGGAAAGGGACAACAAAAAGAAAAGGCTGAAACGGTTCCATATCACAGGCTGTTCTTATTTGCAGACTCCACTGACATCATTTTAATGGTTGTTGGCACCATTGGGGCCATTGGAAATGGCCTTGGGATGCCTCTCATGACATTGATTTTCGGGGAACTAATTAATACCTTTGGCAATAACCGATTTGGCCCCAACGTTGTCACAGAAGTTTCCAAGGTCTGCCTGAAATTTGTGTACTTAGGAATAGGCACCGGCGTGGGTGCTTTCCTCCAGGTGACTTGCTGGATGGTCACCGGGGAAAGACAGGCTGCCAGAATAAGGGGCTTGTATTTGAAAACTATATTAAGACAGGATATTGCTTTCTTTGATATGGAAACTAACACTGGAGAGGTGATAGGGAGGATGTCAGGTGACACTGTTCTCATACAAGATGCTATTGGTGAGAAGGTTGGGAGATTTCTGCAGCTATTAGCAACCTTTTTGGGGGGCTTTGTGATAGCATTTATCAAAGGGTGGCTTCTAACTGCTGTCATGTTATCCGCTGTTCCCCTCGTTGCTGCTGCTGGTGCTGCTATGGCCTTTATCATAGGAATGATGGCAAGCCGAGGCCAAAACGCGTATTCCAAAGCTTCACATGTAGTTGAAGAGACAATAGGTTCAATAAGAACTGTTGCATCCTTTACTGGGGAAAAGCAAGCAGTGTCTACTTACAAGAAATTTCTTTCTGATGCTTATAGATCAGGAGTTCATGAAGGTTTCGTAGGTGGAATGGGTCTTGGCATATTTATGTTAGTTATGTTCTGCGGTTATGCTTTGTCTGTATGGTTTGGCGCAAAGATGATAACGGAAAGAGGATATAGTGCGGGTGCGGTGGTCAATGTGTTTGTTGCTGTGTTAAATGCTTCCATGTCTCTTGGTCAGGCATCTCCTTCCATGAGTGCTTTCGCTGCAGGTCAAGCAGCAGCTTACAAAATGTTTCAGACAATTGAGAGAAAACCAGAGATAGATGCGTATGACCCTAATGGAAAAAAACTAGTGGATATTCATGGTGAAATCCATTTGAGGGAAGTTTATTTCAGCTATCCAGCCAGACCTGAGGAGTTGATATTCAATGGATTCTCTCTTCATATACCTAGTGGCACCACTGCAGCTTTAGTAGGACAAAGTGGAAGTGGGAAGTCTACAGTTATCAGTTTAATTGAAAGATTCTATGATCCACAGGCTGGTGAAGTTCTTATTGATGGCACTAATGTGAAAGAATTTCAGCTTAGATGGATCAGAGGGAAAATTGGCCTTGTCAGCCAGGAGCCAGTGTTGTTTGCATCTAGCATTAAGGATAATATTTCATATGGAAAAGATGGAGCAACAGTTGAAGAGATAAGAGGTGCAGCTGAACTGGCAAATGCCGCTAAATTCATTGACAAACTGCCACAGGGATTGGACACAATGGTTGGTGAACATGGAACTCAACTATCCGGTGGACAGAAGCAGCGAATTGCCATTGCAAGAGCAATCTTGAAAGATCCAAGAATTTTACTTCTGGATGAAGCAACAAGTGCACTTGATGCAGAGTCAGAAAGAATAGTACAAGAAGCTCTAGACAGGGTCATGGTCAACAGAACTACTGTTATTGTCGCACATCGCCTGAGCACGGTGAGAAATGCAGATATGATTGCCGTAATTCATAGAGGGAAAATGGTTGAGAAAGGAACACACTTAGAATTAACCAAGACTCCTGAGGGAGCTTACTCTCAACTTGTACGTTTACAAGAAGGAAACCAGGAATCAGAAGAAACAAGAGACAACCAAAACAAGAGGGAACTTTCCTCAGAATCCTTTAGAAAGTTGAGTCAAAGGCTGTCACTTCGAAGATCAGGATCATCATTGGGGAACAGTAGCCGCCACTCTTTTTCAGTTTCATTTGGTTTAACTACAGGCATTAGCATCCCTGATCCTGAACTTGAAAACTCACAGAAACAAGAAAAATCGCCAGAAGTTTCACTCCGGCGGCTTGCTTCCCTCAATAAGTCCGAGATTCCAGTGCTTCTGATTGGATGTGTAGCTGCCATAGCAAATGGTGTTATATTTCCAATATTTGGCGTGTTACTCTCCAGTGTTATCAAAACATTTTTTAAACCATATCCTGAGATGAAAAAGGATTCCAAGTTTTGGGCCCTTATGTTTGTGACCCTTGGAATTGGATCTTTAATAGCAATTCCAGCCCGAAGTTACTTTTTCTCTGTGGCTGGCAGTAAGTTAATCCGACGAATCAGGCTCATTTGTTTTGAGAAGGTGATCAACATGGAGGTTGGTTGGTTTGATGAGCCTGAGCACTCTAGTGGTGAAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCTGTGCGTGCCCTTGTTGGTGATGCTCTAGGACTACTGGTTCAAAATATAGCAACAGCATTGTCAGGTTTGATTATTGCTTTCATTGCGAGCTGGCAGTTGGCGTTTATTTTTCTTGTCTTGGTTCCCCTTATTGGAGTCAATGGCTATATCCAAATGAAATTTATGAAGGGATCCAGCACAGATGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGTTAATGATGCAGTTGGAAGCATAAGAACAGTAGCTTCTTTCTGTGCAGAGGAGAAAGTTATGGAAATATACAGGAAGAAATGTGAAGGTCCCATGAAAGCAGGGATTCGACAAGGCTTGATAAGTGGAACAGGATTTGGTCTTTCATTTTTCTTTCTATTCAGTGTCTATGCAACCAATTTCTATGCTGGAGCCAGATTTGTGGAAGCTGGCAAGGCATCATTCTCAGATGTTTTTATGGTTTTCTTTGCTTTAACTATGGCATCTGTTGGAATTTCCCAATCAAGCTCCCTTGCTCCTGATTCTAACAAAGCCAAGATAGCAACTGCTTCCATATTCAGAATAATTGATAGGAAATCGAAGATAGAGCCTAGTGATGAGGTCGGTAACACACTGGACACTGTAAAAGGAGAAATACATATTCGTCATGTAAGCTTTAAGTATCCATCTAGGCCAGATATACAAATTTTTCGAGACTTAAGCTTGACTATCCATTCTGGCAAGACTGTAGCCCTTGTTGGTGAAAGTGGGAGTGGAAAATCCACAGTGATTGCCTTGTTACAGAGATTTTATGATCCTGATTCTGGTCAAATTACAATTGATGGGGTAGAAATTCAGAGTTTAAAACTCAAGTGGTTAAGGCAGCAGATGGGACTTGTAAGTCAAGAGCCAGTCTTGTTCAATGACACCATCCGTGACAATATTGCATATGGAAAGGAAGGAAATGCAACTGAAGCAGAAGTCATAACCGCAGCAAAACTGGCCAATGCACATGGATTTATCAGTGGCTTACAACAGGGTTATGATACAGTAGTGGGAGAAAGGGGAATCCAACTGTCTGGTGGGCAGAAGCAAAGGGTGGCCATTGCACGTGCCATAATTAAAAGTCCAAAGATATTGCTACTTGATGAGGCCACAAGTGCTCTAGACGCTGAGTCAGAGAGAGTTGTTCAAGATGCCTTAGATAAAGTGATGGTGAGCAGGACCACTGTGGTTGTGGCGCATCGTTTATCTACAATAAAAAATGCAGATGTGATTGCAGTGGTAAAAAATGGCGTTATAGTGGAGAAAGGAAGGCATGAGACACTGATCAACATCAAGGATGGATTTTATGCTTCCTTGGTCCAACTTCATTATACTGCTACAACAGCATGA 3849 0.4253 MSDMMRHGNGLHDVELKHGERRAPESSTNGEKIGKGQQKEKAETVPYHRLFLFADSTDIILMVVGTIGAIGNGLGMPLMTLIFGELINTFGNNRFGPNVVTEVSKVCLKFVYLGIGTGVGAFLQVTCWMVTGERQAARIRGLYLKTILRQDIAFFDMETNTGEVIGRMSGDTVLIQDAIGEKVGRFLQLLATFLGGFVIAFIKGWLLTAVMLSAVPLVAAAGAAMAFIIGMMASRGQNAYSKASHVVEETIGSIRTVASFTGEKQAVSTYKKFLSDAYRSGVHEGFVGGMGLGIFMLVMFCGYALSVWFGAKMITERGYSAGAVVNVFVAVLNASMSLGQASPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKKLVDIHGEIHLREVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGTNVKEFQLRWIRGKIGLVSQEPVLFASSIKDNISYGKDGATVEEIRGAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGTHLELTKTPEGAYSQLVRLQEGNQESEETRDNQNKRELSSESFRKLSQRLSLRRSGSSLGNSSRHSFSVSFGLTTGISIPDPELENSQKQEKSPEVSLRRLASLNKSEIPVLLIGCVAAIANGVIFPIFGVLLSSVIKTFFKPYPEMKKDSKFWALMFVTLGIGSLIAIPARSYFFSVAGSKLIRRIRLICFEKVINMEVGWFDEPEHSSGEIGARLSADAASVRALVGDALGLLVQNIATALSGLIIAFIASWQLAFIFLVLVPLIGVNGYIQMKFMKGSSTDAKMMYEEASQVVNDAVGSIRTVASFCAEEKVMEIYRKKCEGPMKAGIRQGLISGTGFGLSFFFLFSVYATNFYAGARFVEAGKASFSDVFMVFFALTMASVGISQSSSLAPDSNKAKIATASIFRIIDRKSKIEPSDEVGNTLDTVKGEIHIRHVSFKYPSRPDIQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITIDGVEIQSLKLKWLRQQMGLVSQEPVLFNDTIRDNIAYGKEGNATEAEVITAAKLANAHGFISGLQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVSRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINIKDGFYASLVQLHYTATTA 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02424 1282 Gene3D ABC transporter type 1, transmembrane domain 1005 1026 IPR036640 GO:0005524|GO:0016020
Spst1g02424 1282 Gene3D ABC transporter type 1, transmembrane domain 695 1004 IPR036640 GO:0005524|GO:0016020
Spst1g02424 1282 CDD ABC_MTABC3_MDL1_MDL2 1037 1275 - -
Spst1g02424 1282 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Spst1g02424 1282 SUPERFAMILY ABC transporter transmembrane region 697 1021 IPR036640 GO:0005524|GO:0016020
Spst1g02424 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 716 1002 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02424 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 623 IPR027417 -
Spst1g02424 1282 CDD ABC_6TM_Pgp_ABCB1_D2_like 705 1020 - -
Spst1g02424 1282 FunFam ABC transporter B family member 9 49 381 - -
Spst1g02424 1282 ProSitePatterns ABC transporters family signature. 1177 1191 IPR017871 GO:0005524|GO:0016887
Spst1g02424 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 621 IPR003439 GO:0005524
Spst1g02424 1282 Gene3D - 1027 1276 IPR027417 -
Spst1g02424 1282 Gene3D - 375 624 IPR027417 -
Spst1g02424 1282 MobiDBLite consensus disorder prediction 623 645 - -
Spst1g02424 1282 Coils Coil 619 639 - -
Spst1g02424 1282 SUPERFAMILY ABC transporter transmembrane region 48 369 IPR036640 GO:0005524|GO:0016020
Spst1g02424 1282 Pfam ABC transporter 404 552 IPR003439 GO:0005524
Spst1g02424 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02424 1282 Gene3D ABC transporter type 1, transmembrane domain 49 640 IPR036640 GO:0005524|GO:0016020
Spst1g02424 1282 FunFam ABC transporter B family member 1 695 1003 - -
Spst1g02424 1282 Pfam ABC transporter transmembrane region 63 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02424 1282 Pfam ABC transporter transmembrane region 715 987 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g02424 1282 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 346 - -
Spst1g02424 1282 SMART AAA_5 1064 1257 IPR003593 GO:0016887
Spst1g02424 1282 SMART AAA_5 412 604 IPR003593 GO:0016887
Spst1g02424 1282 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524|GO:0016887
Spst1g02424 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1037 1274 IPR003439 GO:0005524
Spst1g02424 1282 PANTHER ABC TRANSPORTER B FAMILY 26 624 IPR039421 -
Spst1g02424 1282 FunFam ABC transporter B family member 1 375 624 - -
Spst1g02424 1282 MobiDBLite consensus disorder prediction 626 645 - -
Spst1g02424 1282 FunFam ABC transporter B family member 1 1027 1277 - -
Spst1g02424 1282 Pfam ABC transporter 1056 1205 IPR003439 GO:0005524
Spst1g02424 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1030 1276 IPR027417 -
Spst1g02424 1282 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02424 Spst-Chr1 32944072 32949394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02424 37 1276 Calmodulin-binding Proteins AT2G36910 44.160 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02424 K05658 - gmx:100802547 2200.25