Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02412 ATGCTAACTCTGTCTCGCGAGAAAATAGCCTCCGTTCTCGTCAACTCCAACTACGCCGTCTCCATCTTTGCCTACGGCGACATCAACCGCATTCCGCGGCCCATCCAACATGCCCTCTCCAACATCCCCGCCGATGTGAAAGATAGGGGCAAGAACATCCTTGTGGACATGTTGATATGGGCACTAGACAATACTGCTCCCGCTAACTACTTGATCATATCCGGCGACATAGACCTCTCCACCGCGCTTCAAAAACTCAGCCTGCGAAGTTACAATATTCTTCTCGCGCATCCGCCGCAAGTTTCTCCCTCCTTCTTCGCCGCCGCTAAAGTCGTTTGGCGTTGGACAATCCTCTCGCCGGCGGTGGCCCTCTCTAAGTTGTCGATTCCGACTACGCTTCCGCCTCTGTTAAACCCACCCCTCTCCGAACAGAAAATAGCCTCCGTTCTCGTCAACTCCAACTACGCCGTCTCCATCTTTGCCTACGGCGACATCAACCGCATTCCGCGGCCCATCCAACATGCCCTCTCCAACATCCCCGCCGATGTGAAAGATAGGGGCAAGAACATCCTTGTGGACATGTTGATATGGGCACTAGACAATACTGCTCCCGCTAACTACTTGATCATATCCGGCGACATAGACCTCTCCACCGCGCTTCAAAAACTCAGCCTGCGAAGTTACAATATTCTTCTCGCGCATCCGCCGCAAGTTTCTCCCTCCTTCTTCGCCGCCGCTAAAGTCGTTTGGCGTTGGACAATCCTCTCTGCCGGCGACGCTAACTCTGTCTCGCAAAAAATAGCCTCCGTTCTCATCAACTCCAACTACGTCGGCGCCGTCTCCATCTTTGCCTACAGCGACATCAACCGCATTCCGCAGCCCATCCAACACGCCCTCTCCAACATCCCCGCCGATGTGAAAGATAGGGACAAGAACATCCTAGTGGACATGTTGATATGGGCACTAAACAATACTGCTCCCGCTAACTACTTGATCATATCCGGCGACATAGACCTCCCCACCGCACTTCACAAACTCAGCCTGCGAAGTTACAATATTCTTCTTGCGCATCCGCCGCAAGTTTCTCCCTCCTTCTTCGCCGCCGCCAAAGTCGTTTGGCGTTGGATAATCCTCTCCGCCGGTGACGCTAACTCTGTCTCGCAGAAAATAGCCTCCGTTCTCGTCAACTCCAACTACGTAGGCGCCGTCTCCATCTTTGCCTACGGCGACATCAACCGCATTCCGCGGCCCATCCAACACGCCCTCTCCAGCATCCCTGCCGATGTGAAAGATAGGGACAAGAACATCCTAGTGGACATGTTGATATGGGCACTAGACAATACTGCTCCCGCTAACTACTTGATCATATCCGGCGACATAGACCTCTCCACCGCGCTTCACAAACTCAGCCTGCAAAACGCTAACTCTGTCTCGCAGAAAATAGCCTCCGTTCTCGTCAACTCCAACTACATCGGCGCCGTCTCCATCTTTGCCTACGGCGACATCAACCGCATTCCGCGGCCCATCCAACACGCCCTCTCCAGCATCCCCGCTGATGTGAAAGATAGGGACAAGGACATCCTAGTGGACATGTTGATATGGGCACTAGACAATACTGCTCCCGCTAACTACTTGATCATATCCGGTGACATAGACCTCTCCACCGCGCTTCACAAACTCAGCCTGCGAAGTTACAATATTCTTCTCGCGCATCCGCCGCAAGTTTCTCCCTCCTTCTTCGCCGCCGCCAAAGTCGTTTGGCGTTGGACAATCCTCTTCGCCGGCGACGCTAACTCTGTCTCGCAGAAAATAGCCTCCGTTTTCGTCAACTCCAACTACGTCGGCGCCGTCTCCATCTTTGCCTACGGCGACATCAACCGCATTCCGCAGCCCATCCAACACACCCTCTCCAGCATCCCCACCGATGTGAAAGATAGGGACAAGAACATCCTAGTGGACATGTTGATATGGGCACTAGACAATACTGCTCCCGCTAACTACTTGATCATATACGGCGACATAGACCTCTCCACCGCGCTTCACAAACTCAGCCTGCGAAGTTACAATATTCTTCTCGTGCATCCGCCGCAAGTTTCTCCCTCCTTCTTCGCCGTCGCCAAAGTCGTTTGGCGTTGGACAATCCTCTCCACCAGCGCCTCCGTTCTCGTCAACTCCAACTACGTCGGCGCCGTCTCCATCTTTGCCTACGGCGACATCAACCGCATTTCGCGGCCTATCCAACACGCCCTCTCCAGCATCCCCACCGACAATCCCGCTCCCGCTAACTACTTGATCATATCCGGCGACATAGACCTCTCCACCGCGCTTCACAAACTCAGCCTGCGAAGTTACAATATTCTTTTCCCGCATCCGCCGCAAGTTTCTCCCTCCTTCTTCGCCGCCGCCAAAGTCAAAATAGCCTCCGTTCTCGTCAACTCCAACTACGTCGGCGCCGTCTCCATCTTTGCCTACGACGACATCAACCGCATTCCGCGACCCATCCAACACGCCCTCTCCAGCATCCCCGCCGATGTGAAAGATAGGGACAAGAACATCCTAGTGGACATGTTGATATGGGCACTAGACAATCCCGCTCTCGCTAACTACTTGATCATATCCGGCGACATAGACCTCTCCACCGCGCTTCACAAACTCAGCCTGCGAAGTTACAATATTCTTCTCGCGCATCCGCCGCAAGTTTCTCCCTCCTTCTTCGCCGCCACCAAAGTCACGCTAACTCCGGTCTCGCAGAATATAGCCTCCGCTCTCGTCAACTCCAACTACGTCAGCGTCGTCTCCATCTTTGCCTATGGCGACATCAACCGCATTCTGCGGCCCATCCAGCACGCCCTCTCCAGCACCGGCGTCGCTCTTAACCACATCCCCGCCGATGTGAAAGATAGGGACAAGAACATCCTAGTGGACATGTTGATATGGGCACTAGACAATCCCGCTCCCCCTACCTACTTGATCATATCCGGCGACATAGACCTCTCCACCGCGTTTCACAAACTCAGCCTGCGAAGTTACAACATTCTCCTCGCGCATCCGCCGCAAGTTTTTCCCTCCCTCTTCGCTGCCGCCAAAGTTGTTTGGCATTGGACAATCCTCTCCGCCGACGGTGACCCTTTCTACGTTGCCGATTCTGACTCTGCCTTCGCCTCTGTTACAGGAATAATTGCCGAAGCTTTGAGGCTGAAACCTGAGATGGAAGATCCACGTGTCCGAGATGTTGGCACATCTCAGCATCAAAATATCCAAGATGAATCAGTAAAGGCTTACATCTCTAAGGCGGTGAAAGCCACCGTGTCAAAGCGTTCTATACGAGTGATCGGCTCACAAATCGAGTACGGAGACAAAGACAGTGGCATTAAGATGGCCCTCGACGATTGCAAGGACTTGCTGCAATCCGCCATGCAGAACGCTCACTACATTTCGCAGAACATAACCTCTCTTCTCGTCAACTCTAACTACGTTGGTATCGTCTCCATCTTTGTCTACGGCGACACCAACCGCATTTCGCTGCCCGTCCAGCATGCCCTCTTCAGCACCGGTGTCGCTCTCAACCACATCCCCGCCGGTGTGAAAGATGCGAGCAACAAGAAGATCCTAGTGGACATGCTGCTGTGGGCAGTAGACAATCCCTCACCCGCTAACTATATGCTCATATTCGGTGACAGAGACTTCTCCAACGTGCTTCACCAACTCAGCCTGCGTAGGTACAACATTCTCCTCGCGCATCCCCCGCAAGTCTCTCCCTCCCTCCTCGCCGCCGCCAAAGTCGTTTGGCTTTGGACAATCCTCTCTGTCGGCGATGGCCCTCTCCATGTTGCCAATTCCGATTCTGTCTCCACCTCCGCCTCTGGAGCAGTATTGAAGAACATGAATAGCGTTTTCAAAGAGCAGATACTTGCAGACAAGCTCCCCAAGCTTAATAACTCCCAACAATGCATCTTAAGCTCGAGCTTGAAAATGGACATGATGGACGTGGACGAAACTTCTGCACCTAGAGAGGGGAAGCCCGTTTTGGTGATATTGGTGGGAGCACCGGGAAGCGGGAAATCCACCTTCGGCGAAGAAGTAATGCGTTCCTCTACTCGCCCTTGGTTCGTGTTTGCCAGGATGGTATTTGGCCTCGGTTTTGGCACTTTAGAACAGCTCGGGGGTGTTAGTGTGTCGTGGGGAAGTGATGTGAAATGGTTGATTTTTAGAGTGTTATTTGCTTAG 4227 0.5325 MLTLSREKIASVLVNSNYAVSIFAYGDINRIPRPIQHALSNIPADVKDRGKNILVDMLIWALDNTAPANYLIISGDIDLSTALQKLSLRSYNILLAHPPQVSPSFFAAAKVVWRWTILSPAVALSKLSIPTTLPPLLNPPLSEQKIASVLVNSNYAVSIFAYGDINRIPRPIQHALSNIPADVKDRGKNILVDMLIWALDNTAPANYLIISGDIDLSTALQKLSLRSYNILLAHPPQVSPSFFAAAKVVWRWTILSAGDANSVSQKIASVLINSNYVGAVSIFAYSDINRIPQPIQHALSNIPADVKDRDKNILVDMLIWALNNTAPANYLIISGDIDLPTALHKLSLRSYNILLAHPPQVSPSFFAAAKVVWRWIILSAGDANSVSQKIASVLVNSNYVGAVSIFAYGDINRIPRPIQHALSSIPADVKDRDKNILVDMLIWALDNTAPANYLIISGDIDLSTALHKLSLQNANSVSQKIASVLVNSNYIGAVSIFAYGDINRIPRPIQHALSSIPADVKDRDKDILVDMLIWALDNTAPANYLIISGDIDLSTALHKLSLRSYNILLAHPPQVSPSFFAAAKVVWRWTILFAGDANSVSQKIASVFVNSNYVGAVSIFAYGDINRIPQPIQHTLSSIPTDVKDRDKNILVDMLIWALDNTAPANYLIIYGDIDLSTALHKLSLRSYNILLVHPPQVSPSFFAVAKVVWRWTILSTSASVLVNSNYVGAVSIFAYGDINRISRPIQHALSSIPTDNPAPANYLIISGDIDLSTALHKLSLRSYNILFPHPPQVSPSFFAAAKVKIASVLVNSNYVGAVSIFAYDDINRIPRPIQHALSSIPADVKDRDKNILVDMLIWALDNPALANYLIISGDIDLSTALHKLSLRSYNILLAHPPQVSPSFFAATKVTLTPVSQNIASALVNSNYVSVVSIFAYGDINRILRPIQHALSSTGVALNHIPADVKDRDKNILVDMLIWALDNPAPPTYLIISGDIDLSTAFHKLSLRSYNILLAHPPQVFPSLFAAAKVVWHWTILSADGDPFYVADSDSAFASVTGIIAEALRLKPEMEDPRVRDVGTSQHQNIQDESVKAYISKAVKATVSKRSIRVIGSQIEYGDKDSGIKMALDDCKDLLQSAMQNAHYISQNITSLLVNSNYVGIVSIFVYGDTNRISLPVQHALFSTGVALNHIPAGVKDASNKKILVDMLLWAVDNPSPANYMLIFGDRDFSNVLHQLSLRRYNILLAHPPQVSPSLLAAAKVVWLWTILSVGDGPLHVANSDSVSTSASGAVLKNMNSVFKEQILADKLPKLNNSQQCILSSSLKMDMMDVDETSAPREGKPVLVILVGAPGSGKSTFGEEVMRSSTRPWFVFARMVFGLGFGTLEQLGGVSVSWGSDVKWLIFRVLFA 1408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02412 1408 CDD PIN_limkain_b1_N_like 1141 1248 - -
Spst1g02412 1408 CDD PIN_limkain_b1_N_like 382 475 - -
Spst1g02412 1408 CDD PIN_limkain_b1_N_like 788 897 - -
Spst1g02412 1408 CDD PIN_limkain_b1_N_like 6 98 - -
Spst1g02412 1408 PANTHER LIMKAIN B LKAP 805 907 IPR024768 GO:0005777|GO:0010468
Spst1g02412 1408 CDD PIN_limkain_b1_N_like 144 235 - -
Spst1g02412 1408 CDD PIN_limkain_b1_N_like 473 572 - -
Spst1g02412 1408 CDD PIN_limkain_b1_N_like 596 695 - -
Spst1g02412 1408 CDD PIN_limkain_b1_N_like 915 1017 - -
Spst1g02412 1408 CDD PIN_limkain_b1_N_like 259 358 - -
Spst1g02412 1408 Pfam NYN domain 145 247 IPR021139 GO:0004540
Spst1g02412 1408 Pfam NYN domain 1141 1260 IPR021139 GO:0004540
Spst1g02412 1408 Pfam NYN domain 382 470 IPR021139 GO:0004540
Spst1g02412 1408 Pfam NYN domain 818 908 IPR021139 GO:0004540
Spst1g02412 1408 Pfam NYN domain 596 706 IPR021139 GO:0004540
Spst1g02412 1408 Pfam NYN domain 917 1029 IPR021139 GO:0004540
Spst1g02412 1408 Pfam NYN domain 259 370 IPR021139 GO:0004540
Spst1g02412 1408 Pfam NYN domain 8 109 IPR021139 GO:0004540
Spst1g02412 1408 Pfam NYN domain 475 583 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02412 Spst-Chr1 32689838 32738843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02412 806 909 C2H2 Transcription Factor Family AT5G61190 57.143 1.98e-26 115