Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02411 ATGTTGATATGGGCATTAGACAATCCCGCTCCCGCTAACTACTTGATCATATCCGGCGACATAGACCTCTCCACCGCGCTTCACAAACTCAGCCTGCGAAGTTACAACATTCTTCTCGTGCATCCGCCGCAAGTTTCTCCCTCTTCGCCGGCGGTGGCCCTCTCTACGTTGCCGATTCCGACTAAAATAGCCTCCGTTCTCGTCAACTCCAACTACGCCGTCTCCATCTTTGCCTACGGCGACATCAACCGCATTCCGCGGCCCATCCAACATGCCCTCTCCAACATCCCCGCCGATGTGAAAGATAGGGGCAAGAACATCCTTGTGGACATGTTGATATGGGCACTAGACAATACTGCTCCCGCTAACTACTTGATCATATCCGGCGACATAGACCTCTCCACCGCGCTTCAAAAACTCAGCCTGCGAAGTTGCAATATTCTTCTCGCGCATCCGCCGCAAGTTTCTCCCTCCTTCTTCGCCGCCGCTAAAGTCGTTTGGCGTTGGACAATCCTCTCTGCCGGCGGTGGCCCTCTCTAA 540 0.5407 MLIWALDNPAPANYLIISGDIDLSTALHKLSLRSYNILLVHPPQVSPSSPAVALSTLPIPTKIASVLVNSNYAVSIFAYGDINRIPRPIQHALSNIPADVKDRGKNILVDMLIWALDNTAPANYLIISGDIDLSTALQKLSLRSCNILLAHPPQVSPSFFAAAKVVWRWTILSAGGGPL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02411 179 Pfam NYN domain 62 164 IPR021139 GO:0004540
Spst1g02411 179 PANTHER LIMKAIN B LKAP 1 55 IPR024768 GO:0005777|GO:0010468
Spst1g02411 179 CDD PIN_limkain_b1_N_like 63 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02411 Spst-Chr1 32686723 32688077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02411 1 53 C2H2 Transcription Factor Family AT5G61190 64.151 1.60e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02411 - K17573 gmx:100819329 147.132