Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02409 ATGGAGAACCGACACCACCGTGAATTGACCTTCTTAAGCTCCGGCGACTTCCTCAACCGCCCTTTAGATCACACAATCCGCAACACCGATCTTCCCATCAAAGAAATGGACTTCTTCTCATCAGCTTCATCCCCGGGTACTCATAAAAACAACAATAACAATCATATGAACCGTGATAGTCACAAGCATCATGGACATCAAGATCACACTCATCGCCAAGGATCACCAACACATGACCACACTGATCATTGTGTAAACACCGGACTAAATTTAACTTGTGCAAGTGCTGGAGTGAGAAAAGAAGAAAATGGTGAAAATTCTGAAGCTGAGCTGAGTTCTCTTCAAAGTCAATTGCGGAAACTACAAGAGGAGAATCGCAAGTTGAGGACCGTGCTGGACGAGATTACCAGAAGTTATACCCAACTACAAGCTCAGCTATTCATCACTCTGCAGAAAAAAAAGCTTCCTCAGAATCCAGAAGCAAATGGGATGGTGTCGGATCAAAAAAATGTGGACCCTGCTGGAGCATGCAGAAAGTTAGAGGTGGTGAATGATGCATCGGTTTGTGATGAAAAGACTGATGGTGAGGTATCGGTTTGTCGCTCAAACAACGCGGAGGTATTGTCAAAGACAGATGATGAGGCTCCTCAATTGGTTAAACTGAACCATGGAAAACAGGCTTGTCCTAATGCTGCAGAAGATGTTCTTGACCGGTCCTCCTCACAGAGCTGGGGCTCATCCAAGTTAGAGGAACAACCCAAAACTGCAGAACAAGTTGTTGCAGATCAGATTCCTCTCAGAAAAGCCAGGGTTTCCGTACGAGCTAGATCAGAAGCTCCACTGATCAGCGATGGTTGTCAGTGGAGGAAATATGGACAAAAAATGGCGAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGCACTATGGCTGGAGGATGCCCAGTCCGCAAACAAGTGCAGAGATGCGTAGAAGATAAGACAGTGTTGATAACAACCTACGAAGGCAATCACAACCACCCTCTGCCACCAGCTGCCACTGCAATGGCAAGTACCACGTCAGCAGCCGCCGCCATGCTCCTGTCAGGTTCGACACCCAGCAAGGAAGCTCTCACAAACTCTGCAGGATATTACTCTTCACTTCCCTATGCTTCAATGGCAACCCTATCAGCTTCAGCACCATTCCCAACCATTACTCTCGACTTGACCCAAAACCACAACTCCATGCAGCTCCACCGCGTACCACCCCATGCCACTACGTTCCCTCTCCCACTGCATGCTTCCTATGGTTCCCACCTTCTAGATCACCCCTTGTTTTTCTCACAGAAGCTTCCACCTGCGACATTGCCCCTACTTCATCCACGACAACCTTCGTCTATGGTCGAAACGGTCAGTGCAGCCATTGCTTCGGATCCGAACTTCACTGCAGCTTTGGCAGCAGCAATCTCCTCGATCATTGGTGTATCGAGAGGAAGTGATGGTAACAACAATGGAACCGCTGGTGCTATTCCTGGGTCTCCGCAGCTTCCTCATGGTCTATTTAAGAATTTTGGAGTTGCCATCACATCATTCAAATGGACTACCTCTCTAATTTCACTAACTGATGCATTCAATGCTTCAGGTGATATGCAGTTTTCAGTTAATGATGAAGCCGAGGATCAAATGAATGAAGCTTCACTTTCGGAAGAGATGCTTGCTATGTTATATTGCATGGCAGTCATGAGGCTTGTGAATGTTGCTGTTGAGAAGACGCGCAAGAAGGAAGTCACATCGATTGCAGTTGCAGCTGATGCAATTGGTGAAGGAATAACAAAAGTGAAGAAAGAAATTAAGTCTAAGATTCGTGAATTAGCTGTCTCCTTGAAAGTCAATGGGAATGTCCAGTCACAGCTAAAGGGAAAACATCTGGAGATTGTTTCTGTGTTGTTGGAGTATCTTTTGAAAGCTTTAAGTTTCTCAGAGTTGGAAGAGAATGCAGATGATGCTTCAATTGGTCTAACCACAGAGAACGTTTTGGCTGATTGGAAGCTTATCTTACTCAAATTGTGCAATATGGAACCAGAATTACTTCTGAATATTCTTAAGGAAGTCCTAGATATGATTGAGAGTTAG 2112 0.4564 MENRHHRELTFLSSGDFLNRPLDHTIRNTDLPIKEMDFFSSASSPGTHKNNNNNHMNRDSHKHHGHQDHTHRQGSPTHDHTDHCVNTGLNLTCASAGVRKEENGENSEAELSSLQSQLRKLQEENRKLRTVLDEITRSYTQLQAQLFITLQKKKLPQNPEANGMVSDQKNVDPAGACRKLEVVNDASVCDEKTDGEVSVCRSNNAEVLSKTDDEAPQLVKLNHGKQACPNAAEDVLDRSSSQSWGSSKLEEQPKTAEQVVADQIPLRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCVEDKTVLITTYEGNHNHPLPPAATAMASTTSAAAAMLLSGSTPSKEALTNSAGYYSSLPYASMATLSASAPFPTITLDLTQNHNSMQLHRVPPHATTFPLPLHASYGSHLLDHPLFFSQKLPPATLPLLHPRQPSSMVETVSAAIASDPNFTAALAAAISSIIGVSRGSDGNNNGTAGAIPGSPQLPHGLFKNFGVAITSFKWTTSLISLTDAFNASGDMQFSVNDEAEDQMNEASLSEEMLAMLYCMAVMRLVNVAVEKTRKKEVTSIAVAADAIGEGITKVKKEIKSKIRELAVSLKVNGNVQSQLKGKHLEIVSVLLEYLLKALSFSELEENADDASIGLTTENVLADWKLILLKLCNMEPELLLNILKEVLDMIES 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02409 703 MobiDBLite consensus disorder prediction 235 253 - -
Spst1g02409 703 SMART WRKY_cls 282 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g02409 703 MobiDBLite consensus disorder prediction 38 83 - -
Spst1g02409 703 MobiDBLite consensus disorder prediction 234 254 - -
Spst1g02409 703 Pfam WRKY DNA -binding domain 284 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g02409 703 SUPERFAMILY WRKY DNA-binding domain 275 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g02409 703 FunFam probable WRKY transcription factor 31 267 344 - -
Spst1g02409 703 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 98 497 IPR044810 GO:0003700
Spst1g02409 703 Coils Coil 104 145 - -
Spst1g02409 703 Gene3D WRKY domain 267 344 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g02409 703 ProSiteProfiles WRKY domain profile. 277 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02409 Spst-Chr1 32661097 32671626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02409 107 486 WRKY Transcription Factor Family AT4G04450 45.742 3.46e-82 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst1g02409 WRKY 1.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02409 - - gmx:100783661 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02409 1 32661097 32671626 Spst10g01852 10 18770609 18773424 PCT