Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02406 ATGGGAAAACACTCTAGTTCCTCTTCCTCCTCTATCAGCAGTAGCAGCCACCACCAGCACCACCTTCTCATTTCAACGGCATCCTCTCTCACCCAAGAACTTCCCACTGATCTTAGCCTTGGACTCAGCATTTCTGCCTCTCATCGTGTTGGCTCTTCTATTTCAAGGGGGCATTGGCAACAACCATACCACCCTCTGGTGAACACTTCACAAGCTGCTGAAGTGAATGATTGCAACGATCATAGCAGCTTCTTTGTAAAGGTCTACATGGAAGGCATTCCAATAGGAAGGAAACTCAATATACTTGCTCATGGAGGCTACTATGAGTTAGTGAAGACTCTTGAACACATGTTCGATACCACCATTCTTTGGGGAACAGAGATGAATGGAGTACAACCTGAGAGACGCCATGTGCTAACATACGAAGATGAGGAAGGGGATTTGGTCATGGTTGGAGATGTTCCTTGGGAGATGTTCTTATCCACTGTAAAGAGATTGAAGATCACAAGGGTAGACACATTCGGGTGTTGA 531 0.4595 MGKHSSSSSSSISSSSHHQHHLLISTASSLTQELPTDLSLGLSISASHRVGSSISRGHWQQPYHPLVNTSQAAEVNDCNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVKTLEHMFDTTILWGTEMNGVQPERRHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02406 176 Gene3D - 77 175 - -
Spst1g02406 176 Pfam AUX/IAA family 71 170 IPR033389 -
Spst1g02406 176 ProSiteProfiles PB1 domain profile. 83 173 IPR000270 GO:0005515
Spst1g02406 176 SUPERFAMILY CAD & PB1 domains 78 168 - -
Spst1g02406 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 73 171 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02406 Spst-Chr1 32644049 32644963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02406 87 168 B3 DNA Binding Superfamily AT4G23980 35.366 6.80e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Spst1g02406 AUX_IAA 3.1e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02406 K14484 - gmx:100818376 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02406 1 32644049 32644963 Spst10g01850 10 18748771 18749870 PCT