Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02404 ATGGATGAATACGAAAAGTACCGACAAGAGTACGAGGTGGCACGTGAATCCATGGTGAGTTTCACTTATCACGATGATTTGCTTGAGCTGGTGTGGGAAGATGGTGACGTTGTTGTACGAGGAGGTTCATCAAATAGATCACAAAGGACTAACGAGGATAGAGTGTGTGAAGGTGCCAGCATTAGAAAAAGAACAAGGTTGAACCCTTTATACTCGCTTGAAGATCACTTTCCCCTTCTAAAGGAATCTGACACGAGCTCTTCACATCAAAGCAATGGCCAAGATTCGCGTGAATCCTCCCAAACTAAGAATTCCTGCAAGCTTAACGAAGAATTTGAAAACTTACTGAGACCAGTAAAAGACTCTAAGCCTGTTACCCCAGGCTACAGCCTCTTACAACAGCGCTTGCCTTCATCTCCTCTCGAGAAACATAGAACAGATTCAACCCAAACACCACCACCAGCAAACACACGGAATATGGGGTTTGATCAAAGAACAGCTAAAGTGAACTTCTCCAATTTTTCAATACCTGCAGTGTTCGTCAAATCTATTACTTGTAAGGGAAACAGTGCAACTCAGCAGGCAAAATATCATTCATCTCCAGCAAAAGTGGAGGAGATTGAGGCGCGCAAGGTTGAGAAATCAGCTGAAGAATCACAAGTGCTTCGAAAGCAAACATCCTTAACTGTTGAAAGAAGTGCAAACCCACCCCCACCCCTTGATGAGCACTCTGAAGCTGTTGGTCTTGGAATTCACAGATACCAAGGTCAACTACCTTGTGACCAAACTCCAGTCTCAGAAGCACATAAAGAAAAGGAAAAAGCTTATAACAATAATAAAAATAATAATACCGTGTGTCGAGAACCGTTCCTGGCATCTTCTTCTGTGTGCTCTCTTGGAGCCTCCAACTACCCAAACCTTGGTATCAGGAAACATGAGGACACTGATGACTCGAATGATGAAGAGCCTGAAGATACGTTAAAGCAAGATAGGGAGGGTAGCAGAGTCAAGAGAAGCAGGAATCCTGAGGTTCATAACTTATCTGAGAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGACTATCTGAAGACTCTAAAGCTTCAGTTACAGTGCTATGTATATGAAATGATGCAGATGATGTCAATGGGAAATGGTTTATGGCCGCTTATGATGCTACCTGCTGCCGCGGCGCATCACATGAATGGACCATATTTACCTCAGTTAGTGGGAGCTGGAATGGGATTCCGGCCACCACAGGTTCCTATGCCACCACTTTCTGCTATTACAGACAACATATGTCGTCAGATGTTTGGTTTCCCCAACCAAACACCGCCTATGCCAATGCCTCATGCACCTTTCTTCCCCATCATTGGAAATTCTCCCACACGACCACACTTGGCTACCACCACCACCCCTACCACCGACTTGGCACAACGTCTTGCTAAATCTGCTGCATCTGTCTCACTCCCCAACATCATGGACCCTCTTGAAAATGCAACACAACTCCAGAATCAGGTTTCCTTTCAACACCGCGGCACTAGTACCCCACTAGCTACCCCTTTCATTTTTTCACCCAAGTAG 1653 0.4477 MDEYEKYRQEYEVARESMVSFTYHDDLLELVWEDGDVVVRGGSSNRSQRTNEDRVCEGASIRKRTRLNPLYSLEDHFPLLKESDTSSSHQSNGQDSRESSQTKNSCKLNEEFENLLRPVKDSKPVTPGYSLLQQRLPSSPLEKHRTDSTQTPPPANTRNMGFDQRTAKVNFSNFSIPAVFVKSITCKGNSATQQAKYHSSPAKVEEIEARKVEKSAEESQVLRKQTSLTVERSANPPPPLDEHSEAVGLGIHRYQGQLPCDQTPVSEAHKEKEKAYNNNKNNNTVCREPFLASSSVCSLGASNYPNLGIRKHEDTDDSNDEEPEDTLKQDREGSRVKRSRNPEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQCYVYEMMQMMSMGNGLWPLMMLPAAAAHHMNGPYLPQLVGAGMGFRPPQVPMPPLSAITDNICRQMFGFPNQTPPMPMPHAPFFPIIGNSPTRPHLATTTTPTTDLAQRLAKSAASVSLPNIMDPLENATQLQNQVSFQHRGTSTPLATPFIFSPK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02404 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 404 IPR036638 GO:0046983
Spst1g02404 550 PANTHER TRANSCRIPTION FACTOR PIF3 14 525 IPR044273 GO:0003700|GO:0006355
Spst1g02404 550 SMART finulus 346 395 IPR011598 GO:0046983
Spst1g02404 550 Gene3D - 336 397 IPR036638 GO:0046983
Spst1g02404 550 MobiDBLite consensus disorder prediction 324 353 - -
Spst1g02404 550 CDD bHLH_AtPIF_like 340 410 IPR047265 -
Spst1g02404 550 MobiDBLite consensus disorder prediction 83 105 - -
Spst1g02404 550 MobiDBLite consensus disorder prediction 127 159 - -
Spst1g02404 550 MobiDBLite consensus disorder prediction 82 105 - -
Spst1g02404 550 MobiDBLite consensus disorder prediction 303 355 - -
Spst1g02404 550 MobiDBLite consensus disorder prediction 211 244 - -
Spst1g02404 550 MobiDBLite consensus disorder prediction 257 284 - -
Spst1g02404 550 Pfam Helix-loop-helix DNA-binding domain 344 389 IPR011598 GO:0046983
Spst1g02404 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 389 IPR011598 GO:0046983
Spst1g02404 550 MobiDBLite consensus disorder prediction 117 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02404 Spst-Chr1 32632885 32636492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02404 149 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.739 2.79e-28 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g02404 HLH 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02404 K12126 - gmx:100784724 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02404 1 32632885 32636492 Spst10g01846 10 18721588 18723352 PCT