Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02401 ATGGGAAGGCACTCCTGCTGTTACAAGCAGAAACTTAGGAAGGGTCTGTGGTCACCAGAGGAGGATGAAAAACTTCTGAGGCATATTACTAAGTATGGTCATGGTTGTTGGAGCTCAGTTCCTAAGCAAGCAGGTTTGCAGAGGTGCGGCAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTGAAGAGAGGCACATTTTCACAAGAGGAGGAAAATCTTATCATTGAACTTCATGCAGTGTTAGGGAACAGATGGTCTCAAATTGCAGCACAATTGCCTGGGAGGACTGACAATGAAATAAAGAATCTATGGAATTCTTGCCTAAAGAAGAAACTGAGACAAAGAGGAATAAACCCTGTGACACATAAGCCACTTTCAGAAGTTGAGAGTGGGGAGGAGGAGAAAACAAGGAGCCAAGAATTATCCAATGAATTGAACCTACTGAATTCTGAGAGCTTCAAGTCAGATGAAGGGTCCCATGAGCAGAGAGCGTCTTCAATTGCCCCCAAGGCCTATGAGATGGAAGGTTCTTGCAGCTCCAAGATTAACACCAAAGACGACACCAACTTGATAGCCAATTGTTCCAACAAAGACTTGTTCATAGACAGCTACACCACTAGTTGCCAACCCTCAGATTTGATGGGAACTTACCCTCTTCAGATGACTGACACTCTCCCAACCAATTCAAACTCTAGCCATTGGTTCAGCCCAACTGCAAGACCCTTTGATATGAACTCTGAGTTTACTTCTAATGTTATGTCCATTCTTCCACCTGCAACAACCTCATTTCTCCCTAGTACTTCTTTTTGCTACAAGCCATCTCTTGCCGTTCCTTCAGAAGATATTTCAACACCTTCTTTTGCTTTGAATGGACCCAATTACTGGGAAGCCAGTGCCTCCAACAACAGCAATGGCAGCAACACAAGTGATGGCAACAGAGAGTTGACAAGTAGCAAGAACAGTGTCCTCTCTTCTTGGGGACTGACAGAAGAAGCCAAGTGGTCTGAGTACCTCCACAACCCAATGTTGATGCTGGCAGCTCCTGAATCATTGTGCAACCAAATTAGGCCAGCCACACATTTGGTACCTGATCACAATTTAGGGGCCATGATGCCTGGTTCCAAGGAGCAACACCAGTCACAAACTTCTACCATCTTTTCCAAGGACATCCAGAAGCTAGCAGCAGCCTTTGGACATATATAA 1215 0.4494 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGINPVTHKPLSEVESGEEEKTRSQELSNELNLLNSESFKSDEGSHEQRASSIAPKAYEMEGSCSSKINTKDDTNLIANCSNKDLFIDSYTTSCQPSDLMGTYPLQMTDTLPTNSNSSHWFSPTARPFDMNSEFTSNVMSILPPATTSFLPSTSFCYKPSLAVPSEDISTPSFALNGPNYWEASASNNSNGSNTSDGNRELTSSKNSVLSSWGLTEEAKWSEYLHNPMLMLAAPESLCNQIRPATHLVPDHNLGAMMPGSKEQHQSQTSTIFSKDIQKLAAAFGHI 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02401 404 MobiDBLite consensus disorder prediction 130 144 - -
Spst1g02401 404 Gene3D - 69 146 - -
Spst1g02401 404 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst1g02401 404 FunFam MYB transcription factor 68 140 - -
Spst1g02401 404 PANTHER MYB DOMAIN PROTEIN 55 1 328 - -
Spst1g02401 404 MobiDBLite consensus disorder prediction 122 149 - -
Spst1g02401 404 SMART sant 13 63 IPR001005 -
Spst1g02401 404 SMART sant 66 114 IPR001005 -
Spst1g02401 404 FunFam Myb transcription factor 11 67 - -
Spst1g02401 404 CDD SANT 17 61 IPR001005 -
Spst1g02401 404 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst1g02401 404 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst1g02401 404 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Spst1g02401 404 Gene3D - 11 67 - -
Spst1g02401 404 Coils Coil 135 155 - -
Spst1g02401 404 CDD SANT 69 109 IPR001005 -
Spst1g02401 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst1g02401 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst1g02401 404 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02401 Spst-Chr1 32605038 32606503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02401 1 156 MYB Transcription Factor Family AT4G01680 83.974 5.61e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g02401 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02401 K09422 - gmx:100037467 715.687