Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02387 ATGGCTTCTCTCATTGGCGTTTCTTCCATATACCAAATCCCTACTCTCGAACTTTACCAGAGGCCAAACGCTGCTTCCACTTCTTCCGTTAGGTTGCAATCTTTGGACTCCAAGTCTCACTTCAACAACCTCCTCCGAGCGCACCGTCACTCCTCTGGGCCCCCCTTCAAAACGGGCCTCAAGCCCACTCCCACTTTCCTCCCCTCCGCCGTCGCCACGCCCAATTCCTCCCTCCTTAGCCAAGAAGCCTTCAAAGGACTTGCCCGCGACTTCGACCAAAACGATATCGAGTTCCAACCCGCCGGACCCACCAACACTGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTCGATTCTCTCCAGAGCCGTGGGATTACTCACCTTTTCCCCATTCAGAGAGCCGTGTTCGTACCTGCACTAGAAGGGAGAGATATCATTGCCCGAGCGAAGACCGGTACTGGAAAGACACTAGCGTTCGGCATTCCAATTATCAAAGGCCTCACTGAAGATGAACAAGAACCTTCTCTCAGAAGGTCTGGTAGGCTTCCCAGAGTTTTGGTGCTGGCACCTACAAGGGAGTTAGCGAAGCAAGTGGAGAAGGAGATTAAGGAGTCTGCGCCTTATCTCAACACTGTTTGTGTTTATGGCGGTGTTTCTTATGTTAGTCAGCAGAGTGCGCTTTCTCGAGGTGTTGATGTGGTGGTTGGGACGCCAGGGAGAATAATTGACTTGATTAACGGGAACAGCCTTAAGCTGAATGAGGTTCAGTATTTGGTGCTTGATGAAGCGGATCAGATGCTTGCTGTTGGGTTTGAAGAGGATGTGGAAGTGATTTTGGAGAATCTCCCTTCTCAGAGGCAGAGCATGCTTTTCTCTGCCACCATGCCTGCTTGGGTGAAGAAGTTAGCGAGAAAATATCTGAACAACCCCCTCACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATAGCAGCCACGGCCACTTCAAAGCGATCAATTCTTTCTGATCTTGTAACTGTTTATGCAAAGGGCGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAGCGTCTGAAGCACTGCATGGTGATATATCCCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGAAAATTCACAGTGCTTGTTGCTACTGATGTTGCAGCTCGTGGACTGGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTCCCCAATGATCCTGAGACTTTCGTACATCGCTCTGGTCGTACTGGTCGTGCAGGAAAACATGGTACTGCCATTCTATTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAACGTGATGTAGGCTGCAAGTTTGAATTTGTTAGTCCACCAGCTATGGAAGAGGTCTTGGAGTCATCTGCTCAGCAGGTTGTTGCCACACTTACTGGAGTTCATCCTGAGTCTGTTCAGTTTTTCACCCCAACTGCACAAAAACTGATCGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCACTAGCACAACTTAGTGGGTTTTCTCGACCTCCATCATCGCGGTCTCTTATTACCCACGAACAGGGATGGACTACGTTGCAACTAATTAGGGATTCAGATAATACAAGATATTTTTCAGCAAGATCGGTCACTGGGTTTCTTTCTGATGTTTTTTCGTCAGCTGCTGATGAAGTTGGAAAAATCCATATAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCTGAGGAGATTGCTAAAGAGTTACTTAATAAGGACATACCACCTGGAAACACCATTTCCAAGATCACCAAGGCATTGCATGTTACTTTGTATTGGCAGCTACCTCCTTTGCAAGACGATGGGCCTCCAAGTGATTTCTATGGGAGGTTCTCTGACAGAGAACGAAGTAACCGAAGAGGTTCTACTTCTAGAGGAGGTTTTACTTCTAGGGGAGGTTTTGCTTCTAGGGGAGGTTCTACTTCTAGGGACCGAAGAGGTTTTAAAACCTCACGGGGATGGGAGGGGGAAGACTCTGATGATGACGACTTCAGTGATCGATCTAGTAGGAGAGGTGGTAGAAATTTTAAGACTGGCGGCAACAGCTGGTCTCGAGCATCAGGTAAAAGCAGTGGGGATGATTGGCTGATTGGAGGTAGACGATCGAGCAGGCCTTCATCATCTGACAGATTTGGAGGGGCCTGTTTCAATTGTGGGGAATCTGGGCATCGAGCATCAGATTGTCCAAGCACTTCAAACCGGCGAAGCTTTTTCTAA 2358 0.4724 MASLIGVSSIYQIPTLELYQRPNAASTSSVRLQSLDSKSHFNNLLRAHRHSSGPPFKTGLKPTPTFLPSAVATPNSSLLSQEAFKGLARDFDQNDIEFQPAGPTNTDELDISKLDLPSRLVDSLQSRGITHLFPIQRAVFVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEQEPSLRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVSQQSALSRGVDVVVGTPGRIIDLINGNSLKLNEVQYLVLDEADQMLAVGFEEDVEVILENLPSQRQSMLFSATMPAWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRSILSDLVTVYAKGGKTIVFTQTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKHGTAILLYTSSQRRTVRSLERDVGCKFEFVSPPAMEEVLESSAQQVVATLTGVHPESVQFFTPTAQKLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWTTLQLIRDSDNTRYFSARSVTGFLSDVFSSAADEVGKIHIIADERVQGAVFDLPEEIAKELLNKDIPPGNTISKITKALHVTLYWQLPPLQDDGPPSDFYGRFSDRERSNRRGSTSRGGFTSRGGFASRGGSTSRDRRGFKTSRGWEGEDSDDDDFSDRSSRRGGRNFKTGGNSWSRASGKSSGDDWLIGGRRSSRPSSSDRFGGACFNCGESGHRASDCPSTSNRRSFF 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02387 785 CDD SF2_C_DEAD 331 460 - -
Spst1g02387 785 CDD GUCT_Hera 545 624 - -
Spst1g02387 785 MobiDBLite consensus disorder prediction 650 759 - -
Spst1g02387 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 472 IPR027417 -
Spst1g02387 785 FunFam Nucleolar RNA helicase II 339 529 - -
Spst1g02387 785 MobiDBLite consensus disorder prediction 721 736 - -
Spst1g02387 785 MobiDBLite consensus disorder prediction 654 668 - -
Spst1g02387 785 MobiDBLite consensus disorder prediction 689 703 - -
Spst1g02387 785 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 317 IPR014001 -
Spst1g02387 785 CDD DEADc 120 318 - -
Spst1g02387 785 SUPERFAMILY Retrovirus zinc finger-like domains 747 781 IPR036875 GO:0003676|GO:0008270
Spst1g02387 785 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 106 659 - -
Spst1g02387 785 SMART ultradead3 128 334 IPR014001 -
Spst1g02387 785 SMART c2hcfinal6 761 777 IPR001878 GO:0003676|GO:0008270
Spst1g02387 785 Gene3D - 334 533 IPR027417 -
Spst1g02387 785 Pfam DEAD/DEAH box helicase 133 306 IPR011545 GO:0003676|GO:0005524
Spst1g02387 785 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 491 IPR001650 -
Spst1g02387 785 Pfam Zinc knuckle 761 777 IPR001878 GO:0003676|GO:0008270
Spst1g02387 785 MobiDBLite consensus disorder prediction 669 684 - -
Spst1g02387 785 Gene3D - 110 321 IPR027417 -
Spst1g02387 785 ProSiteProfiles Zinc finger CCHC-type profile. 762 777 IPR001878 GO:0003676|GO:0008270
Spst1g02387 785 SMART helicmild6 371 451 IPR001650 -
Spst1g02387 785 Pfam GUCT (NUC152) domain 538 646 IPR012562 GO:0003723|GO:0004386|GO:0005524
Spst1g02387 785 FunFam ATP-dependent RNA helicase RhlE 102 320 - -
Spst1g02387 785 Gene3D - 733 783 - -
Spst1g02387 785 Pfam Helicase conserved C-terminal domain 343 451 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02387 Spst-Chr1 32450436 32455472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02387 104 473 Eukaryotic Initiation Factors Gene Family AT1G72730 37.795 8.32e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02387 - - gmx:100789516 1285.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02387 1 32450436 32455472 Spst1g02387 1 32450436 32455472 ECH