Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02381 ATGAAGCTCACAGGCTCCCTCCTACTCCTCACTCTTGCTTTGGTGTTAACCACCATCTCTGCAGCGGATCCTGATCCTCTTCAAGACCTCTGTGTCGCTGACCTTGCCTCAGCTGTTAAAGTGAATGGATTCGTTTGCAAAGCTGCTTCCAAGGTAGATGCCTCTGATTTCTTCTCAGACATACTAGCCAAACCAGGTGCCACGAACAACACCTATGGCTCCTTGGTGACTGCAGCCAATGTAGAGAAAATCCCAGGACTCAACACCCTTGGTGTGTCTTTGTCACGCGTTGACTATGCTCCAGGTGGCATCAACCCTCCCCACACTCACCCACGTGCCACCGAGATTGTGTTCGTGCTCGAAGGTACACTCGATGTGGGGTTCATAACCACAGCCAATGTGCTCATATCAAAGACCATCTACAAGGGTGAAATTTTTGTGTTCCCAAAAGGCTTAGTTCACTTCCAGAAGAACAATGCAAAGGAACCTGCTTCAGTCCTTGCAGCCTTCAACAGTCAATTACCTGGCACACAGTCCATTGCTCTCACCTTGTTTACAGCCACACCACCTGTTCCAGACAATGTGTTGAGCAAGGCATTCCAGATTGATACCAAGGAGGTTGAGAAAATCAAGCATGCGCTTGCACCTAAGAAATAA 657 0.4855 MKLTGSLLLLTLALVLTTISAADPDPLQDLCVADLASAVKVNGFVCKAASKVDASDFFSDILAKPGATNNTYGSLVTAANVEKIPGLNTLGVSLSRVDYAPGGINPPHTHPRATEIVFVLEGTLDVGFITTANVLISKTIYKGEIFVFPKGLVHFQKNNAKEPASVLAAFNSQLPGTQSIALTLFTATPPVPDNVLSKAFQIDTKEVEKIKHALAPKK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02381 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Spst1g02381 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Spst1g02381 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 19 211 - -
Spst1g02381 218 FunFam germin-like protein subfamily 2 member 1 22 216 - -
Spst1g02381 218 SMART Cupin_1_3 59 208 IPR006045 -
Spst1g02381 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Spst1g02381 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Spst1g02381 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Spst1g02381 218 Pfam Cupin 62 207 IPR006045 -
Spst1g02381 218 SUPERFAMILY RmlC-like cupins 23 212 IPR011051 -
Spst1g02381 218 CDD cupin_OxOx 23 214 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02381 Spst-Chr1 32392283 32393450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02381 8 218 Miscellaneous Gene Families AT3G05930 56.604 1.86e-83 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02381 - - gmx:100302722 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02381 1 32392283 32393450 Spst10g01822 10 18551936 18560669 PCT