Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02379 ATGGCGAGAGTTTTCAGGGTTGGCATTGCTATAGCACTTGTTTTCAGCAACTGGGTCGATGGGTTCGTAGGTTATTATGATCATCACTTCAATGAAACAGAGTTGTCTTTATTAGAGGCTCAAGAAGCTTCCTTATCCTACGCCGGAAGCAATCTTCTGCTGGTAGGACTCACCCTTCTTCAAAATGCTGCTGCTAAAGGAGCAGTTTGCTTGGATGGAACATTACCTGGATATCATTTGCATCGAGGATATGGATCAGGATCAAATAGCTGGCTTATTAATTTAGAGGGTGGTGGATGGTGTAATAATATTAGAACATGTGTTTATCGCAAGAAAACCCGGCGTGGATCATCAGATTTCATGGAAAAAGAGATACCTTTTACTGGAATATTGAGTAATAAGGCTGAAGAAAATCCAGATTTTTTCAATTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCTTTTGCTGGGGATAGTGAAGATGAGACTGCAGAACTACAATTCAGAGGGCAGCGTATTTGGGCAGCTGCAATGGAAGATTTGATGTCAAAGGGAATGCGTTTTGCCGATCAGGCTCTTCTTTCGGGATGCTCCGCGGGTGGCCTGGCTACTATTATTCATTGTGATGAATTTCGTGGTCTCTTTCCAATGACCACCAGAGTGAAATGTCTAAGTGATGCTGGTTTGTTTCTTGATGCGATTGATGTATCTGGTGGCCGTACACTCAGGAACTTATACAGTGGTGTCGTAGGATTGCAGGGAGCGCAGAAGAATCTGCCCCAAATTTGTACTAATCACCTTGATCCCATCTCGTGCTTCTTCCCTCAAAACTTGATTGCCAATGTTAAGACCCCGCTATTCATTCTTAATGCTGCTTATGATTCATGGCAGATCCAGTCCAGTTTAGCTCCTCCATCTGCAGATCCGCATGGCTATTGGCATGAATGTAGATTAAATCATGCTAAATGTACTGGACCACAAATCCAATTTCTGCAAGGATTCAGGACTCACATGCTAAATGTTGTTAAAGACTTCGCAAGATCAAACCAGAATGGCTTGTATATTAATTCATGTTTTTCTCACTGCCAAACTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCTGTTATTAGGAACAAGGCAATTGCTCTGGCTGTTGGAGATTGGTATTTCGATCGAGCAGGTGTTAAGGCCATTGATTGTCCTTACCCTTGTGATAATACGTGCCATCATCTGATTTTCGGGTGA 1257 0.4264 MARVFRVGIAIALVFSNWVDGFVGYYDHHFNETELSLLEAQEASLSYAGSNLLLVGLTLLQNAAAKGAVCLDGTLPGYHLHRGYGSGSNSWLINLEGGGWCNNIRTCVYRKKTRRGSSDFMEKEIPFTGILSNKAEENPDFFNWNRVKLRYCDGASFAGDSEDETAELQFRGQRIWAAAMEDLMSKGMRFADQALLSGCSAGGLATIIHCDEFRGLFPMTTRVKCLSDAGLFLDAIDVSGGRTLRNLYSGVVGLQGAQKNLPQICTNHLDPISCFFPQNLIANVKTPLFILNAAYDSWQIQSSLAPPSADPHGYWHECRLNHAKCTGPQIQFLQGFRTHMLNVVKDFARSNQNGLYINSCFSHCQTERQDTWFADNSPVIRNKAIALAVGDWYFDRAGVKAIDCPYPCDNTCHHLIFG 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02379 418 PANTHER NOTUM-RELATED 51 414 IPR004963 GO:0016787
Spst1g02379 418 Pfam Pectinacetylesterase 53 397 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02379 Spst-Chr1 32354654 32358898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02379 13 417 Carbohydrate Esterase AT1G57590 68.780 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02379 K19882 - gmx:100782401 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02379 1 32354654 32358898 Spst10g01839 10 18680470 18684801 ECH
Spst1g02379 1 32354654 32358898 Spst1g02379 1 32354654 32358898 ECH
Spst10g01839 10 18680470 18684801 Spst1g02379 1 32354654 32358898 ECH
Spst3g02839 3 77943345 77947828 Spst1g02379 1 32354654 32358898 ECH
Spst1g02379 1 32354654 32358898 Spst10g01817 10 18513734 18518100 PCT